| SRR6320498 | carpel | wt | 1.35 | MC |
| SRR5560728 | caryopsis | wild_type | 3.02 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.48 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.89 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.18 | MC |
| SRR4947495 | root | control | 0.74 | MC |
| SRR7265400 | coleoptile | 2dA | 2.87 | MC |
| SRR7265401 | coleoptile | 2dA | 1.33 | MC |
| SRR7265402 | coleoptile | 2dA | 1.36 | MC |
| SRR7265403 | coleoptile | 2dN | 1.89 | MC |
| SRR7265404 | coleoptile | 2dN | 0.98 | MC |
| SRR7265405 | coleoptile | 2dN | 0.98 | MC |
| SRR7265406 | coleoptile | 3dA | 0.57 | MC |
| SRR7265407 | coleoptile | 3dA | 0.65 | MC |
| SRR7265408 | coleoptile | 3dA | 0.80 | MC |
| SRR7265416 | coleoptile | 4dN | 3.33 | MC |
| SRR7265417 | coleoptile | 4dN | 3.22 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.33 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.38 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.69 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.00 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.93 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.83 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.56 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.46 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.79 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.14 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.21 | MC |
| SRR7265391 | embryo | 12hN | 0.73 | MC |
| SRR7265392 | embryo | 12hN | 0.45 | MC |
| SRR7265393 | embryo | 12hN | 0.63 | MC |
| SRR7265394 | embryo | 24hA | 1.45 | MC |
| SRR7265396 | embryo | 24hA | 0.50 | MC |
| SRR7265397 | embryo | 24hN | 0.49 | MC |
| SRR2338866 | endosprem | control | 1.09 | MC |
| SRR2338867 | endosprem | control | 0.41 | MC |
| SRR2338868 | endosprem | high_temperature | 1.50 | MC |
| SRR1213691 | flower | wt | 0.46 | MC |
| SRR8240820 | leaf | wild_type | 0.32 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.53 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.05 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.07 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.45 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.29 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.49 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.23 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.57 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.76 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.33 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.72 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.53 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.66 | MC |
| SRR6502089 | leaf | control | 1.60 | MC |
| SRR6502090 | leaf | control | 1.38 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.37 | MC |
| SRR6502100 | leaf | control | 2.50 | MC |
| SRR6168973 | leaf | none (control) | 2.42 | MC |
| SRR6168974 | leaf | none (control) | 4.15 | MC |
| SRR6168975 | leaf | none (control) | 0.89 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.12 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.01 | MC |
| SRR6168981 | leaf | none (control) | 0.76 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.73 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.76 | MC |
| SRR8582889 | panicle | AM | 0.35 | MC |
| SRR8582890 | panicle | AM | 0.40 | MC |
| SRR8582893 | panicle | PM | 0.23 | MC |
| SRR5110429 | panicle | Dawn | 0.40 | MC |
| SRR5110430 | panicle | Dawn | 0.75 | MC |
| SRR5110431 | panicle | Dawn | 0.74 | MC |
| SRR4947496 | root | control | 3.28 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.59 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.60 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.53 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.57 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.02 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.79 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.53 | MC |
| SRR5110446 | panicle | Dusk | 1.39 | MC |
| SRR5110447 | panicle | Dusk | 1.24 | MC |
| SRR5110448 | panicle | Dusk | 1.95 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.61 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.77 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.71 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.84 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.70 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.81 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.31 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 5.94 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.16 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.34 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.82 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.37 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.03 | MC |
| SRR5126167 | root | "mock,14_days" | 1.44 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.04 | MC |
| SRR4947479 | root | control | 3.10 | MC |
| SRR4947480 | root | control | 3.26 | MC |
| SRR4947481 | root | control | 0.96 | MC |
| SRR4947482 | root | Al | 2.85 | MC |
| SRR4947484 | root | Al | 0.85 | MC |
| SRR4947488 | root | control | 3.66 | MC |
| SRR4947491 | root | Al | 2.87 | MC |
| SRR4947492 | root | Al | 1.12 | MC |
| SRR4947494 | root | control | 3.88 | MC |
| SRR4947497 | root | control | 1.47 | MC |
| SRR4947498 | root | Al | 2.69 | MC |
| SRR4947499 | root | Al | 2.62 | MC |
| SRR4947501 | root | Al | 1.30 | MC |
| SRR4947502 | root | control | 3.77 | MC |
| SRR4947503 | root | control | 1.38 | MC |
| SRR4947504 | root | control | 1.01 | MC |
| SRR4947506 | root | Al | 2.20 | MC |
| SRR4947507 | root | Al | 3.05 | MC |
| SRR4947508 | root | Al | 3.55 | MC |
| SRR4947509 | root | Al | 4.86 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.64 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.84 | MC |
| SRR6502094 | root | control | 1.34 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.68 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.75 | MC |
| SRR6502107 | root | control | 1.50 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.88 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.83 | MC |
| SRR2154086 | seedling | wt | 0.45 | MC |
| SRR2154083 | seedling | wt | 1.32 | MC |
| SRR2154084 | seedling | wt | 3.25 | MC |
| SRR2154085 | seedling | wt | 0.99 | MC |
| SRR3098742 | seedling | wt | 0.73 | MC |
| SRR3098743 | seedling | wt | 0.50 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.97 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.36 | MC |
| SRR1944583 | seedling | no_treatment | 1.05 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.56 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.47 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.53 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.76 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.19 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.21 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.23 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.61 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.30 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.31 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.49 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.34 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.49 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.65 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.48 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.62 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.47 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.02 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.67 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.63 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.00 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.88 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.64 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.65 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.48 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 0.97 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.20 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.51 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.01 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.71 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.51 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.45 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.12 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.51 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.64 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.69 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.31 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.46 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.27 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.44 | MC |