| SRR5560727 | caryopsis | wild_type | 1.22 | MC |
| SRR5560728 | caryopsis | wild_type | 0.76 | MC |
| SRR5560729 | caryopsis | wild_type | 1.36 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.03 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.47 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.66 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.66 | MC |
| SRR7265400 | coleoptile | 2dA | 2.21 | MC |
| SRR7265401 | coleoptile | 2dA | 2.29 | MC |
| SRR7265402 | coleoptile | 2dA | 2.53 | MC |
| SRR7265404 | coleoptile | 2dN | 2.97 | MC |
| SRR7265405 | coleoptile | 2dN | 3.35 | MC |
| SRR7265409 | coleoptile | 3dN | 3.59 | MC |
| SRR7265410 | coleoptile | 3dN | 1.45 | MC |
| SRR7265411 | coleoptile | 3dN | 1.75 | MC |
| SRR7265413 | coleoptile | 4dA | 0.83 | MC |
| SRR7265415 | coleoptile | 4dN | 3.27 | MC |
| SRR7265416 | coleoptile | 4dN | 1.56 | MC |
| SRR7265417 | coleoptile | 4dN | 1.39 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.22 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.82 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.44 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.20 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.40 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.61 | MC |
| SRR7265378 | embryo | 1hA | 0.34 | MC |
| SRR7265379 | embryo | 1hN | 0.29 | MC |
| SRR7265380 | embryo | 1hN | 0.36 | MC |
| SRR7265382 | embryo | 3hA | 1.11 | MC |
| SRR7265383 | embryo | 3hA | 0.76 | MC |
| SRR7265384 | embryo | 3hA | 0.83 | MC |
| SRR7265388 | embryo | 12hA | 2.62 | MC |
| SRR7265389 | embryo | 12hA | 2.68 | MC |
| SRR7265390 | embryo | 12hA | 3.05 | MC |
| SRR7265392 | embryo | 12hN | 4.35 | MC |
| SRR7265394 | embryo | 24hA | 2.29 | MC |
| SRR7265395 | embryo | 24hA | 2.70 | MC |
| SRR7265396 | embryo | 24hA | 2.70 | MC |
| SRR7265397 | embryo | 24hN | 5.03 | MC |
| SRR7265398 | embryo | 24hN | 4.07 | MC |
| SRR7265399 | embryo | 24hN | 4.16 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.35 | MC |
| SRR1213691 | flower | wt | 0.58 | MC |
| SRR8060837 | leaf | wild_type | 0.19 | MC |
| SRR8240824 | leaf | wild_type | 0.24 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.15 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.19 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.87 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.09 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.38 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.43 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.43 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.19 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.43 | MC |
| SRR5856927 | leaf | control | 0.27 | MC |
| SRR5856928 | leaf | control | 0.31 | MC |
| SRR5856932 | leaf | salt | 0.18 | MC |
| SRR5856933 | leaf | control | 0.30 | MC |
| SRR5856934 | leaf | control | 0.21 | MC |
| SRR5856936 | leaf | salt | 0.13 | MC |
| SRR5856937 | leaf | salt | 0.16 | MC |
| SRR5856938 | leaf | salt | 0.16 | MC |
| SRR6168973 | leaf | none (control) | 0.48 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.61 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.43 | MC |
| SRR8582888 | panicle | AM | 0.51 | MC |
| SRR8582889 | panicle | AM | 0.30 | MC |
| SRR8582890 | panicle | AM | 0.18 | MC |
| SRR8582892 | panicle | PM | 0.78 | MC |
| SRR8582893 | panicle | PM | 0.25 | MC |
| SRR5110429 | panicle | Dawn | 0.42 | MC |
| SRR5110431 | panicle | Dawn | 0.75 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.30 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.64 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.72 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.74 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.42 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.37 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.64 | MC |
| SRR5110445 | panicle | Dusk | 1.07 | MC |
| SRR5110446 | panicle | Dusk | 0.37 | MC |
| SRR5110447 | panicle | Dusk | 0.40 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.72 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.29 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.48 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.66 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.87 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.37 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.36 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.02 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.63 | MC |
| SRR5126147 | root | "mock,1_day" | 0.94 | MC |
| SRR5126148 | root | "mock,1_day" | 0.68 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.31 | MC |
| SRR5126153 | root | "mock,7_days" | 0.65 | MC |
| SRR5126157 | root | "mock,7_days" | 0.55 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.68 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.40 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.38 | MC |
| SRR5126165 | root | "mock,14_days" | 0.56 | MC |
| SRR5126169 | root | "mock,14_days" | 0.30 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.05 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.09 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.45 | MC |
| SRR4947483 | root | Al | 0.42 | MC |
| SRR4947498 | root | Al | 0.51 | MC |
| SRR4947505 | root | control | 0.55 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.48 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.39 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.04 | MC |
| SRR6502094 | root | control | 0.93 | MC |
| SRR6502095 | root | control | 0.77 | MC |
| SRR6502096 | root | control | 0.59 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.47 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.13 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.84 | MC |
| SRR6502106 | root | control | 0.78 | MC |
| SRR6502107 | root | control | 1.13 | MC |
| SRR6502108 | root | control | 0.95 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.91 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.28 | MC |
| SRR2154086 | seedling | wt | 0.38 | MC |
| SRR2154082 | seedling | wt | 0.47 | MC |
| SRR2154083 | seedling | wt | 0.55 | MC |
| SRR2154084 | seedling | wt | 0.63 | MC |
| SRR2154085 | seedling | wt | 0.61 | MC |
| SRR2154087 | seedling | wt | 0.61 | MC |
| SRR3098742 | seedling | wt | 0.46 | MC |
| SRR3098743 | seedling | wt | 0.42 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.45 | MC |
| SRR1944583 | seedling | no_treatment | 0.35 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.21 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.36 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.50 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.16 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.84 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.09 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.63 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.48 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.53 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.18 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.14 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.28 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.08 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 7.48 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.89 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 5.03 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 9.44 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 7.28 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.84 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 7.54 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.06 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.39 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.38 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.65 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.68 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.93 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.86 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.97 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.47 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.37 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.79 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.90 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.68 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.38 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.54 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.90 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.67 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.89 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.09 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.20 | MC |