| SRR4457252 | 2nd_leaf | DAH12 | 0.42 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.47 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.43 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.04 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.77 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.75 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.39 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.66 | MC |
| SRR6320498 | carpel | wt | 1.36 | MC |
| SRR5560727 | caryopsis | wild_type | 0.79 | MC |
| SRR5560728 | caryopsis | wild_type | 0.98 | MC |
| SRR5560729 | caryopsis | wild_type | 0.60 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.67 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.98 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.54 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.39 | MC |
| SRR7265401 | coleoptile | 2dA | 3.35 | MC |
| SRR7265402 | coleoptile | 2dA | 3.77 | MC |
| SRR7265403 | coleoptile | 2dN | 2.76 | MC |
| SRR7265404 | coleoptile | 2dN | 3.59 | MC |
| SRR7265405 | coleoptile | 2dN | 1.00 | MC |
| SRR7265408 | coleoptile | 3dA | 2.61 | MC |
| SRR7265409 | coleoptile | 3dN | 2.41 | MC |
| SRR7265410 | coleoptile | 3dN | 1.37 | MC |
| SRR7265411 | coleoptile | 3dN | 0.82 | MC |
| SRR7265412 | coleoptile | 4dA | 2.88 | MC |
| SRR7265413 | coleoptile | 4dA | 2.26 | MC |
| SRR7265414 | coleoptile | 4dA | 3.26 | MC |
| SRR7265415 | coleoptile | 4dN | 2.45 | MC |
| SRR7265416 | coleoptile | 4dN | 2.33 | MC |
| SRR7265417 | coleoptile | 4dN | 1.43 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.74 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.67 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.64 | MC |
| SRR7265388 | embryo | 12hA | 3.96 | MC |
| SRR7265389 | embryo | 12hA | 2.90 | MC |
| SRR7265390 | embryo | 12hA | 3.47 | MC |
| SRR7265391 | embryo | 12hN | 3.62 | MC |
| SRR7265392 | embryo | 12hN | 1.83 | MC |
| SRR7265393 | embryo | 12hN | 1.81 | MC |
| SRR7265394 | embryo | 24hA | 2.44 | MC |
| SRR7265395 | embryo | 24hA | 3.25 | MC |
| SRR7265396 | embryo | 24hA | 3.82 | MC |
| SRR7265397 | embryo | 24hN | 4.08 | MC |
| SRR7265398 | embryo | 24hN | 1.93 | MC |
| SRR7265399 | embryo | 24hN | 3.04 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.19 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.42 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.31 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.40 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.47 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.63 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.78 | MC |
| SRR1213691 | flower | wt | 0.42 | MC |
| SRR8060835 | leaf | wild_type | 0.50 | MC |
| SRR8060836 | leaf | wild_type | 1.08 | MC |
| SRR8060837 | leaf | wild_type | 0.76 | MC |
| SRR8240824 | leaf | wild_type | 0.39 | MC |
| SRR8240818 | leaf | wild_type | 0.31 | MC |
| SRR8240820 | leaf | wild_type | 0.38 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.37 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.56 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.90 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.83 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.07 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.65 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.51 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.18 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.58 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.95 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.53 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.32 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.31 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.72 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.52 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.47 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.64 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.62 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.44 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.95 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.65 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.65 | MC |
| SRR1761529 | leaf | drought | 3.65 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.68 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.04 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.32 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.94 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.10 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.74 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.39 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.50 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.70 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.31 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.34 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.30 | MC |
| SRR1213692 | leaf | wt | 0.86 | MC |
| SRR1213693 | leaf | wt | 0.95 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.21 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.72 | MC |
| SRR5856933 | leaf | control | 1.02 | MC |
| SRR5856935 | leaf | control | 0.42 | MC |
| SRR5856936 | leaf | salt | 0.16 | MC |
| SRR5856937 | leaf | salt | 0.22 | MC |
| SRR5856938 | leaf | salt | 0.24 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.95 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.86 | MC |
| SRR6168973 | leaf | none (control) | 0.86 | MC |
| SRR6168974 | leaf | none (control) | 1.62 | MC |
| SRR6168975 | leaf | none (control) | 1.09 | MC |
| SRR6168980 | leaf | none (control) | 1.13 | MC |
| SRR6168981 | leaf | none (control) | 0.50 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.25 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.55 | MC |
| SRR8582889 | panicle | AM | 0.13 | MC |
| SRR8582893 | panicle | PM | 0.22 | MC |
| SRR5110431 | panicle | Dawn | 0.55 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.86 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.41 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.83 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.34 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.51 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.76 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.03 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.73 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.07 | MC |
| SRR5126147 | root | "mock,1_day" | 0.41 | MC |
| SRR5126149 | root | "mock,1_day" | 0.83 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.31 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.58 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.44 | MC |
| SRR5126153 | root | "mock,7_days" | 0.52 | MC |
| SRR5126155 | root | "mock,7_days" | 1.09 | MC |
| SRR5126157 | root | "mock,7_days" | 0.87 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.83 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.36 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.40 | MC |
| SRR5126165 | root | "mock,14_days" | 1.13 | MC |
| SRR5126167 | root | "mock,14_days" | 1.61 | MC |
| SRR5126169 | root | "mock,14_days" | 0.78 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.18 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.21 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.68 | MC |
| SRR1213695 | root | wt | 0.63 | MC |
| SRR6502106 | root | control | 1.00 | MC |
| SRR6441555 | seedling | wild_type | 0.48 | MC |
| SRR2154083 | seedling | wt | 0.38 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.32 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.73 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.78 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.65 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.12 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.99 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.82 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.50 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.58 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.20 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.45 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.69 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.16 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.48 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.75 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.73 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.66 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.70 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.68 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.80 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.33 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.22 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.66 | MC |