| SRR4457249 | 2nd_leaf | DAH4 | 4.63 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 3.85 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.61 | MC |
| SRR3745125 | anther | wt | 1.55 | MC |
| SRR3745126 | anther | wt | 1.90 | MC |
| SRR3745127 | anther | wt | 2.16 | MC |
| SRR358795 | callus | wt | 9.36 | MC |
| SRR358797 | callus | wt | 8.81 | MC |
| SRR6320473 | carpel | wt | 1.97 | MC |
| SRR6320498 | carpel | wt | 2.82 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.16 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.66 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.44 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.22 | MC |
| SRR7265400 | coleoptile | 2dA | 3.49 | MC |
| SRR7265404 | coleoptile | 2dN | 3.92 | MC |
| SRR7265406 | coleoptile | 3dA | 3.02 | MC |
| SRR7265408 | coleoptile | 3dA | 2.45 | MC |
| SRR7265410 | coleoptile | 3dN | 3.62 | MC |
| SRR7265412 | coleoptile | 4dA | 2.63 | MC |
| SRR7265413 | coleoptile | 4dA | 4.82 | MC |
| SRR7265414 | coleoptile | 4dA | 4.02 | MC |
| SRR7265415 | coleoptile | 4dN | 4.81 | MC |
| SRR7265417 | coleoptile | 4dN | 3.78 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.45 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.29 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.07 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.41 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.82 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.95 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.08 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.47 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.92 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.69 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.17 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.52 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.37 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.33 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.85 | MC |
| SRR7265382 | embryo | 3hA | 3.56 | MC |
| SRR7265383 | embryo | 3hA | 4.13 | MC |
| SRR7265384 | embryo | 3hA | 3.55 | MC |
| SRR7265388 | embryo | 12hA | 4.37 | MC |
| SRR7265389 | embryo | 12hA | 4.24 | MC |
| SRR7265393 | embryo | 12hN | 3.73 | MC |
| SRR7265394 | embryo | 24hA | 4.00 | MC |
| SRR7265395 | embryo | 24hA | 4.73 | MC |
| SRR7265397 | embryo | 24hN | 4.96 | MC |
| SRR7265399 | embryo | 24hN | 4.39 | MC |
| SRR2338866 | endosprem | control | 1.50 | MC |
| SRR2338867 | endosprem | control | 0.89 | MC |
| SRR2338868 | endosprem | high_temperature | 0.54 | MC |
| SRR2338869 | endosprem | high_temperature | 0.96 | MC |
| SRR976168 | flag_leaf | wild_type | 2.73 | MC |
| SRR8060835 | leaf | wild_type | 1.37 | MC |
| SRR8060836 | leaf | wild_type | 1.68 | MC |
| SRR8060837 | leaf | wild_type | 1.40 | MC |
| SRR8240824 | leaf | wild_type | 0.27 | MC |
| SRR8240825 | leaf | wild_type | 0.35 | MC |
| SRR8240826 | leaf | wild_type | 0.22 | MC |
| SRR8240818 | leaf | wild_type | 0.28 | MC |
| SRR8240820 | leaf | wild_type | 0.69 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.31 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.54 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.16 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.33 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.61 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.07 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.54 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.74 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.58 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.02 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.97 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.52 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.22 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.52 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.86 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.89 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.56 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 4.61 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.99 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.27 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.98 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.33 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 3.70 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.88 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.97 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.34 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 3.70 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.87 | MC |
| SRR1761528 | leaf | drought | 4.98 | MC |
| SRR1761529 | leaf | drought | 5.33 | MC |
| SRR1761530 | leaf | control | 3.70 | MC |
| SRR1761531 | leaf | control | 2.88 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.04 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.00 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.82 | MC |
| SRR6417967 | leaf | H2O_control | 2.22 | MC |
| SRR6417968 | leaf | H2O_control | 2.03 | MC |
| SRR6417969 | leaf | H2O_control | 1.53 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.70 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.45 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.47 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.49 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.95 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.23 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.92 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.96 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.18 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.71 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.28 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.28 | MC |
| SRR6502088 | leaf | control | 2.47 | MC |
| SRR6502089 | leaf | control | 2.46 | MC |
| SRR6502090 | leaf | control | 1.46 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.91 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.65 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.76 | MC |
| SRR6502100 | leaf | control | 1.50 | MC |
| SRR6502101 | leaf | control | 1.42 | MC |
| SRR6502102 | leaf | control | 1.78 | MC |
| SRR5856927 | leaf | control | 1.47 | MC |
| SRR5856929 | leaf | control | 1.99 | MC |
| SRR5856930 | leaf | salt | 1.59 | MC |
| SRR5856932 | leaf | salt | 1.08 | MC |
| SRR5856934 | leaf | control | 1.90 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.65 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.27 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 2.08 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.92 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.13 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.94 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.48 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 4.75 | MC |
| SRR6168973 | leaf | none (control) | 3.22 | MC |
| SRR6168975 | leaf | none (control) | 3.32 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.95 | MC |
| SRR6168979 | leaf | none (control) | 1.87 | MC |
| SRR6168980 | leaf | none (control) | 1.53 | MC |
| SRR8582888 | panicle | AM | 1.06 | MC |
| SRR8582889 | panicle | AM | 0.57 | MC |
| SRR8582890 | panicle | AM | 0.73 | MC |
| SRR8582891 | panicle | PM | 3.45 | MC |
| SRR8582892 | panicle | PM | 7.38 | MC |
| SRR8582893 | panicle | PM | 4.39 | MC |
| SRR5110430 | panicle | Dawn | 3.80 | MC |
| SRR4947496 | root | control | 1.60 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.64 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.65 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.98 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.23 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.87 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.95 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.38 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 5.22 | MC |
| SRR5110445 | panicle | Dusk | 3.66 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.16 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.98 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.84 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.69 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.25 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.87 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.88 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.58 | MC |
| SRR1633182 | panicle | WT | 3.19 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.01 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.71 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.31 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.06 | MC |
| SRR5126147 | root | "mock,1_day" | 4.24 | MC |
| SRR5126148 | root | "mock,1_day" | 3.13 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.30 | MC |
| SRR4947478 | root | control | 1.21 | MC |
| SRR4947479 | root | control | 3.20 | MC |
| SRR4947480 | root | control | 2.10 | MC |
| SRR4947481 | root | control | 2.23 | MC |
| SRR4947484 | root | Al | 2.44 | MC |
| SRR4947485 | root | Al | 3.55 | MC |
| SRR4947487 | root | control | 0.66 | MC |
| SRR4947488 | root | control | 4.43 | MC |
| SRR4947489 | root | control | 2.00 | MC |
| SRR4947490 | root | Al | 2.06 | MC |
| SRR4947492 | root | Al | 3.17 | MC |
| SRR4947493 | root | Al | 2.44 | MC |
| SRR4947494 | root | control | 2.01 | MC |
| SRR4947498 | root | Al | 5.63 | MC |
| SRR4947499 | root | Al | 4.93 | MC |
| SRR4947500 | root | Al | 3.71 | MC |
| SRR4947501 | root | Al | 4.99 | MC |
| SRR4947502 | root | control | 1.93 | MC |
| SRR4947503 | root | control | 1.79 | MC |
| SRR4947504 | root | control | 0.58 | MC |
| SRR4947505 | root | control | 2.88 | MC |
| SRR4947506 | root | Al | 2.56 | MC |
| SRR4947507 | root | Al | 4.93 | MC |
| SRR4947508 | root | Al | 2.93 | MC |
| SRR4947509 | root | Al | 2.59 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.25 | MC |
| SRR6502094 | root | control | 2.04 | MC |
| SRR6502095 | root | control | 4.07 | MC |
| SRR6502096 | root | control | 2.21 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.35 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.70 | MC |
| SRR6502108 | root | control | 3.09 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.15 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.30 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.44 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.52 | MC |
| SRR6441554 | seedling | wild_type | 2.82 | MC |
| SRR6441555 | seedling | wild_type | 2.34 | MC |
| SRR3098741 | seedling | wt | 2.39 | MC |
| SRR3098742 | seedling | wt | 1.68 | MC |
| SRR3098743 | seedling | wt | 1.86 | MC |
| SRR2857719 | seedling | drought_stress_0h | 4.15 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.91 | MC |
| SRR1944583 | seedling | no_treatment | 3.01 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.84 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.42 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.61 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 3.79 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.03 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.05 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.05 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.34 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.00 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.19 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.96 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.88 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.16 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.17 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.55 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.38 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.06 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.72 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.03 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.30 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.69 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.46 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.21 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.28 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.15 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.40 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.09 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.96 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.49 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.12 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.82 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.57 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.01 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 7.67 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 8.07 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 8.17 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 6.57 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 7.37 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 6.18 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 8.09 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 7.95 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 9.19 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 8.87 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.77 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.82 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.78 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.72 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.02 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.66 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.43 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.99 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.58 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.57 | MC |