| SRR4457258 | 2nd_leaf | DAH28 | 0.28 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.37 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.51 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.73 | MC |
| SRR358797 | callus | wt | 1.61 | MC |
| SRR358798 | callus | wt | 2.10 | MC |
| SRR7265403 | coleoptile | 2dN | 0.33 | MC |
| SRR7265404 | coleoptile | 2dN | 0.50 | MC |
| SRR7265405 | coleoptile | 2dN | 0.39 | MC |
| SRR7265407 | coleoptile | 3dA | 0.33 | MC |
| SRR7265408 | coleoptile | 3dA | 0.35 | MC |
| SRR7265409 | coleoptile | 3dN | 0.51 | MC |
| SRR7265410 | coleoptile | 3dN | 0.34 | MC |
| SRR7265411 | coleoptile | 3dN | 0.64 | MC |
| SRR7265412 | coleoptile | 4dA | 1.45 | MC |
| SRR7265414 | coleoptile | 4dA | 1.53 | MC |
| SRR7265416 | coleoptile | 4dN | 0.53 | MC |
| SRR7265417 | coleoptile | 4dN | 0.47 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.60 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.87 | MC |
| SRR7265391 | embryo | 12hN | 0.82 | MC |
| SRR7265392 | embryo | 12hN | 0.67 | MC |
| SRR7265393 | embryo | 12hN | 0.73 | MC |
| SRR7265399 | embryo | 24hN | 0.60 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.28 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.29 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.56 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.38 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.60 | MC |
| SRR8060835 | leaf | wild_type | 0.25 | MC |
| SRR8240826 | leaf | wild_type | 0.30 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.85 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.83 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.76 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.60 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.20 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.86 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.23 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.60 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.06 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.97 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.13 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.59 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.83 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.10 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.73 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.60 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.67 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.24 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.14 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.47 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.02 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.87 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.82 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.50 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.72 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.72 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.93 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.93 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.60 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.60 | MC |
| SRR1761529 | leaf | drought | 0.60 | MC |
| SRR504365 | leaf | wt | 0.27 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.57 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.07 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.51 | MC |
| SRR6417967 | leaf | H2O_control | 0.86 | MC |
| SRR6417968 | leaf | H2O_control | 0.64 | MC |
| SRR6417969 | leaf | H2O_control | 0.65 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.02 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.04 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.80 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.78 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.24 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.08 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.83 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.29 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.46 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.33 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.26 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.18 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.35 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.24 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.38 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.64 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.44 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.74 | MC |
| SRR6502088 | leaf | control | 0.45 | MC |
| SRR6502089 | leaf | control | 1.01 | MC |
| SRR6502090 | leaf | control | 1.51 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.47 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.50 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.70 | MC |
| SRR6502101 | leaf | control | 0.59 | MC |
| SRR6502102 | leaf | control | 0.51 | MC |
| SRR5856929 | leaf | control | 0.17 | MC |
| SRR5856931 | leaf | salt | 0.15 | MC |
| SRR5856932 | leaf | salt | 0.34 | MC |
| SRR5856934 | leaf | control | 0.24 | MC |
| SRR5856936 | leaf | salt | 0.19 | MC |
| SRR5856937 | leaf | salt | 0.39 | MC |
| SRR5856938 | leaf | salt | 0.27 | MC |
| SRR6168973 | leaf | none (control) | 0.52 | MC |
| SRR6168974 | leaf | none (control) | 1.08 | MC |
| SRR6168975 | leaf | none (control) | 2.84 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.39 | MC |
| SRR6168980 | leaf | none (control) | 0.37 | MC |
| SRR6168981 | leaf | none (control) | 0.34 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.77 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.13 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.51 | MC |
| SRR8582892 | panicle | PM | 0.75 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.68 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.36 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.61 | MC |
| SRR5126167 | root | "mock,14_days" | 0.38 | MC |
| SRR1213694 | root | wt | 0.31 | MC |
| SRR1213695 | root | wt | 0.23 | MC |
| SRR4947482 | root | Al | 0.92 | MC |
| SRR4947483 | root | Al | 0.74 | MC |
| SRR4947484 | root | Al | 0.78 | MC |
| SRR4947485 | root | Al | 3.08 | MC |
| SRR4947490 | root | Al | 0.57 | MC |
| SRR4947491 | root | Al | 0.50 | MC |
| SRR4947492 | root | Al | 0.89 | MC |
| SRR4947493 | root | Al | 0.93 | MC |
| SRR4947498 | root | Al | 0.61 | MC |
| SRR4947499 | root | Al | 0.51 | MC |
| SRR4947500 | root | Al | 1.28 | MC |
| SRR4947501 | root | Al | 0.88 | MC |
| SRR4947506 | root | Al | 0.44 | MC |
| SRR4947507 | root | Al | 0.55 | MC |
| SRR4947508 | root | Al | 0.99 | MC |
| SRR4947509 | root | Al | 1.65 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.26 | MC |
| SRR2154082 | seedling | wt | 0.43 | MC |
| SRR2154084 | seedling | wt | 0.40 | MC |
| SRR2154087 | seedling | wt | 0.43 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.36 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.46 | MC |
| SRR358791 | seedling | wt | 1.02 | MC |
| SRR358793 | seedling | wt | 0.84 | MC |
| SRR358794 | seedling | wt | 0.49 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.40 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.05 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.52 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.85 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.23 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.39 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.09 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.22 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.38 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.76 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.05 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.53 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.67 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.46 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.37 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.58 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.85 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.86 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.64 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.02 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.67 | MC |