| SRR4457249 | 2nd_leaf | DAH4 | 3.32 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 3.37 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.28 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.10 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.02 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.82 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.89 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.97 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.70 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.72 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.60 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.06 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.50 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 4.23 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.37 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.88 | MC |
| SRR3745125 | anther | wt | 1.99 | MC |
| SRR3745126 | anther | wt | 1.00 | MC |
| SRR3745127 | anther | wt | 1.02 | MC |
| SRR358795 | callus | wt | 4.04 | MC |
| SRR358796 | callus | wt | 4.89 | MC |
| SRR358797 | callus | wt | 6.75 | MC |
| SRR358798 | callus | wt | 4.23 | MC |
| SRR5560727 | caryopsis | wild_type | 3.49 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.50 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.52 | MC |
| SRR4947495 | root | control | 4.09 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.95 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.69 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 4.04 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.76 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.49 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.84 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.75 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.06 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.81 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.30 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.75 | MC |
| SRR2338866 | endosprem | control | 2.14 | MC |
| SRR2338867 | endosprem | control | 1.73 | MC |
| SRR2338869 | endosprem | high_temperature | 1.34 | MC |
| SRR976168 | flag_leaf | wild_type | 0.87 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.33 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.64 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.46 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.70 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.15 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.50 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.63 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.05 | MC |
| SRR4457242 | flag_leaf | DAH28 | 3.31 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.47 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.77 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.99 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.69 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.44 | MC |
| SRR4457248 | flag_leaf | DAH44 | 3.85 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.30 | MC |
| SRR8240824 | leaf | wild_type | 2.51 | MC |
| SRR8240825 | leaf | wild_type | 1.89 | MC |
| SRR8240826 | leaf | wild_type | 2.06 | MC |
| SRR8240818 | leaf | wild_type | 1.30 | MC |
| SRR8240819 | leaf | wild_type | 2.34 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.27 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.89 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.62 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 5.74 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.67 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.68 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.67 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.68 | MC |
| SRR1761530 | leaf | control | 2.67 | MC |
| SRR1761531 | leaf | control | 1.68 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.26 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.78 | MC |
| SRR6417967 | leaf | H2O_control | 1.12 | MC |
| SRR6417968 | leaf | H2O_control | 2.74 | MC |
| SRR6417969 | leaf | H2O_control | 1.72 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.51 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.33 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.57 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.16 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.93 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.77 | MC |
| SRR6502088 | leaf | control | 4.10 | MC |
| SRR6502090 | leaf | control | 2.87 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.04 | MC |
| SRR6502101 | leaf | control | 4.15 | MC |
| SRR5856927 | leaf | control | 2.29 | MC |
| SRR5856937 | leaf | salt | 1.82 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 3.54 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 4.81 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 2.54 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 4.53 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.86 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.43 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.06 | MC |
| SRR6168973 | leaf | none (control) | 2.49 | MC |
| SRR6168974 | leaf | none (control) | 4.06 | MC |
| SRR6168975 | leaf | none (control) | 2.67 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.24 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.03 | MC |
| SRR8582891 | panicle | PM | 5.89 | MC |
| SRR5110429 | panicle | Dawn | 3.41 | MC |
| SRR5110430 | panicle | Dawn | 1.61 | MC |
| SRR5110431 | panicle | Dawn | 3.37 | MC |
| SRR5110432 | panicle | Dawn | 2.83 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.82 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.05 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.18 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.62 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.33 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.83 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.09 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.74 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.51 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.98 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 4.11 | MC |
| SRR5110445 | panicle | Dusk | 3.51 | MC |
| SRR5110446 | panicle | Dusk | 2.80 | MC |
| SRR5110447 | panicle | Dusk | 3.16 | MC |
| SRR5110448 | panicle | Dusk | 4.20 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.18 | MC |
| SRR5110450 | panicle | Dawn + 14h | 4.28 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.61 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.13 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.78 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.86 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.20 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.75 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.79 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.29 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.01 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.82 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 5.06 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 4.50 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.58 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.44 | MC |
| SRR1213694 | root | wt | 1.45 | MC |
| SRR4947478 | root | control | 3.35 | MC |
| SRR4947479 | root | control | 4.43 | MC |
| SRR4947480 | root | control | 4.64 | MC |
| SRR4947482 | root | Al | 3.09 | MC |
| SRR4947487 | root | control | 4.27 | MC |
| SRR4947488 | root | control | 4.40 | MC |
| SRR4947491 | root | Al | 4.75 | MC |
| SRR4947494 | root | control | 3.87 | MC |
| SRR4947497 | root | control | 4.21 | MC |
| SRR4947498 | root | Al | 5.21 | MC |
| SRR4947501 | root | Al | 4.11 | MC |
| SRR4947502 | root | control | 5.46 | MC |
| SRR4947505 | root | control | 4.93 | MC |
| SRR4947506 | root | Al | 4.06 | MC |
| SRR4947507 | root | Al | 4.44 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.11 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.35 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.57 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.41 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.97 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.50 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.86 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.76 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.57 | MC |
| SRR6441554 | seedling | wild_type | 3.03 | MC |
| SRR3098741 | seedling | wt | 2.57 | MC |
| SRR3098743 | seedling | wt | 2.41 | MC |
| SRR1944583 | seedling | no_treatment | 3.50 | MC |
| SRR358793 | seedling | wt | 4.25 | MC |
| SRR358794 | seedling | wt | 5.44 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.14 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.30 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.96 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.93 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.58 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.53 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 4.24 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.50 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.27 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.58 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.83 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.99 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.32 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.33 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.79 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.88 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.11 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.52 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.41 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.93 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.65 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.12 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.09 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 3.74 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.44 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.29 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.05 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.99 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.55 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.31 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.03 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.29 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.05 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.81 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.45 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.88 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.41 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.67 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.63 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.76 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.45 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.23 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.40 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.36 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.20 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 6.09 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.86 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 6.67 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 4.19 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.71 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.12 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.37 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.65 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.22 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.43 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.68 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.14 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.73 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.04 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.26 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.11 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.71 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.73 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 3.16 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.06 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.76 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.65 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.68 | MC |