| SRR4457252 | 2nd_leaf | DAH12 | 1.00 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.18 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.17 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.85 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.23 | MC |
| SRR3745126 | anther | wt | 0.45 | MC |
| SRR6320498 | carpel | wt | 3.16 | MC |
| SRR5560727 | caryopsis | wild_type | 1.77 | MC |
| SRR5560728 | caryopsis | wild_type | 1.44 | MC |
| SRR5560729 | caryopsis | wild_type | 1.44 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.57 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.04 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.67 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.81 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.41 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.33 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.43 | MC |
| SRR7265376 | embryo | 1hA | 2.02 | MC |
| SRR7265377 | embryo | 1hA | 1.17 | MC |
| SRR7265379 | embryo | 1hN | 2.91 | MC |
| SRR7265380 | embryo | 1hN | 1.27 | MC |
| SRR7265381 | embryo | 1hN | 1.73 | MC |
| SRR7265382 | embryo | 3hA | 3.34 | MC |
| SRR7265393 | embryo | 12hN | 2.78 | MC |
| SRR7265394 | embryo | 24hA | 3.84 | MC |
| SRR976168 | flag_leaf | wild_type | 1.32 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.85 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.38 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.48 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.56 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.18 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.93 | MC |
| SRR8060837 | leaf | wild_type | 0.78 | MC |
| SRR8240825 | leaf | wild_type | 0.67 | MC |
| SRR8240826 | leaf | wild_type | 1.76 | MC |
| SRR8240818 | leaf | wild_type | 0.77 | MC |
| SRR8240819 | leaf | wild_type | 1.01 | MC |
| SRR8240820 | leaf | wild_type | 1.03 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.23 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.88 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.76 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.52 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.54 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.54 | MC |
| SRR1761529 | leaf | drought | 1.54 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.35 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.87 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.62 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.48 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.52 | MC |
| SRR6502089 | leaf | control | 0.43 | MC |
| SRR6502100 | leaf | control | 0.75 | MC |
| SRR5856931 | leaf | salt | 0.62 | MC |
| SRR5856935 | leaf | control | 1.99 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 4.53 | MC |
| SRR6168974 | leaf | none (control) | 1.91 | MC |
| SRR6168981 | leaf | none (control) | 1.43 | MC |
| SRR8582889 | panicle | AM | 1.05 | MC |
| SRR8582890 | panicle | AM | 1.31 | MC |
| SRR8582891 | panicle | PM | 2.70 | MC |
| SRR8582892 | panicle | PM | 0.94 | MC |
| SRR4947496 | root | control | 4.65 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.67 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.11 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.63 | MC |
| SRR1633182 | panicle | WT | 0.64 | MC |
| SRR1633185 | panicle | WT | 0.61 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.72 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 4.29 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.07 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.85 | MC |
| SRR5126147 | root | "mock,1_day" | 1.41 | MC |
| SRR5126148 | root | "mock,1_day" | 2.38 | MC |
| SRR5126149 | root | "mock,1_day" | 0.88 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.08 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.22 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.96 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.42 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.09 | MC |
| SRR4947484 | root | Al | 1.72 | MC |
| SRR4947489 | root | control | 0.46 | MC |
| SRR4947497 | root | control | 5.37 | MC |
| SRR4947504 | root | control | 2.14 | MC |
| SRR6502096 | root | control | 0.58 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.31 | MC |
| SRR6502108 | root | control | 0.38 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.52 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.40 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.34 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.73 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.01 | MC |
| SRR6441554 | seedling | wild_type | 1.82 | MC |
| SRR6441555 | seedling | wild_type | 1.75 | MC |
| SRR2154082 | seedling | wt | 0.36 | MC |
| SRR2154083 | seedling | wt | 0.29 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.07 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.46 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.69 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.13 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.08 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.54 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.41 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.38 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.41 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.51 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.35 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.10 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.23 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.05 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.49 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.51 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 4.78 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.34 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.39 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.14 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.44 | MC |