| SRR358795 | callus | wt | 5.21 | MC |
| SRR358796 | callus | wt | 2.93 | MC |
| SRR358797 | callus | wt | 5.41 | MC |
| SRR358798 | callus | wt | 5.38 | MC |
| SRR6320473 | carpel | wt | 2.55 | MC |
| SRR6320498 | carpel | wt | 2.38 | MC |
| SRR5560727 | caryopsis | wild_type | 0.93 | MC |
| SRR5560728 | caryopsis | wild_type | 1.34 | MC |
| SRR5560729 | caryopsis | wild_type | 1.09 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.54 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.75 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.75 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.74 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.04 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.92 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.70 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.98 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.51 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.66 | MC |
| SRR7265382 | embryo | 3hA | 3.66 | MC |
| SRR7265388 | embryo | 12hA | 0.65 | MC |
| SRR7265390 | embryo | 12hA | 0.43 | MC |
| SRR7265391 | embryo | 12hN | 0.52 | MC |
| SRR7265392 | embryo | 12hN | 0.47 | MC |
| SRR7265393 | embryo | 12hN | 0.52 | MC |
| SRR2338866 | endosprem | control | 1.23 | MC |
| SRR2338867 | endosprem | control | 0.38 | MC |
| SRR2338869 | endosprem | high_temperature | 0.52 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.27 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.50 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.55 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.35 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.31 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.75 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.25 | MC |
| SRR5856927 | leaf | control | 0.43 | MC |
| SRR5856928 | leaf | control | 0.66 | MC |
| SRR5856929 | leaf | control | 0.95 | MC |
| SRR5856930 | leaf | salt | 0.60 | MC |
| SRR5856931 | leaf | salt | 0.38 | MC |
| SRR5856933 | leaf | control | 0.55 | MC |
| SRR5856934 | leaf | control | 1.48 | MC |
| SRR5856935 | leaf | control | 0.59 | MC |
| SRR5856936 | leaf | salt | 0.75 | MC |
| SRR5856937 | leaf | salt | 0.54 | MC |
| SRR5856938 | leaf | salt | 0.58 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 2.18 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.21 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.77 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.48 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.38 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.93 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.54 | MC |
| SRR5110429 | panicle | Dawn | 0.98 | MC |
| SRR5110430 | panicle | Dawn | 2.05 | MC |
| SRR5110431 | panicle | Dawn | 0.42 | MC |
| SRR5110432 | panicle | Dawn | 1.69 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.40 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.58 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.72 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.74 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.62 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.91 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.65 | MC |
| SRR5110446 | panicle | Dusk | 1.50 | MC |
| SRR5110447 | panicle | Dusk | 0.49 | MC |
| SRR5110448 | panicle | Dusk | 1.23 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.77 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.65 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.75 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.79 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.03 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.68 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.40 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.55 | MC |
| SRR1633182 | panicle | WT | 0.46 | MC |
| SRR1633185 | panicle | WT | 0.44 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.43 | MC |
| SRR5126149 | root | "mock,1_day" | 0.68 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.34 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.56 | MC |
| SRR5126155 | root | "mock,7_days" | 0.40 | MC |
| SRR5126157 | root | "mock,7_days" | 5.00 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.60 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.09 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.57 | MC |
| SRR5126165 | root | "mock,14_days" | 0.94 | MC |
| SRR5126167 | root | "mock,14_days" | 1.48 | MC |
| SRR5126169 | root | "mock,14_days" | 0.51 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.33 | MC |
| SRR1213694 | root | wt | 0.76 | MC |
| SRR4947493 | root | Al | 0.58 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.64 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.97 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.76 | MC |
| SRR6502095 | root | control | 0.48 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.56 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.78 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.08 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.98 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.54 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.56 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.80 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.14 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.68 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.58 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.94 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 3.31 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.73 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.95 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.79 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.35 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.77 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.17 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.85 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.86 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.82 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.55 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.92 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.97 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 5.06 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.52 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.68 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.36 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.57 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.78 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 1.56 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.69 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.12 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.98 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.28 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.87 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.10 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.37 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.31 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.30 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.56 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.51 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.44 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.25 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.20 | MC |