| SRR4457249 | 2nd_leaf | DAH4 | 0.82 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 4.24 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.12 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.36 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.41 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.31 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.54 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.57 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 4.75 | MC |
| SRR3745125 | anther | wt | 4.96 | MC |
| SRR3745126 | anther | wt | 4.35 | MC |
| SRR3745127 | anther | wt | 2.65 | MC |
| SRR6320498 | carpel | wt | 3.92 | MC |
| SRR5560727 | caryopsis | wild_type | 1.38 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.44 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.12 | MC |
| SRR4947495 | root | control | 1.77 | MC |
| SRR7265401 | coleoptile | 2dA | 2.89 | MC |
| SRR7265407 | coleoptile | 3dA | 2.75 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.23 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.14 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.76 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.34 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.99 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.88 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.82 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.80 | MC |
| SRR7265377 | embryo | 1hA | 2.38 | MC |
| SRR7265378 | embryo | 1hA | 2.62 | MC |
| SRR7265379 | embryo | 1hN | 3.35 | MC |
| SRR7265381 | embryo | 1hN | 2.82 | MC |
| SRR7265383 | embryo | 3hA | 2.92 | MC |
| SRR7265387 | embryo | 3hN | 2.14 | MC |
| SRR7265393 | embryo | 12hN | 3.98 | MC |
| SRR7265394 | embryo | 24hA | 3.37 | MC |
| SRR7265395 | embryo | 24hA | 4.18 | MC |
| SRR2338866 | endosprem | control | 4.21 | MC |
| SRR2338868 | endosprem | high_temperature | 1.40 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.56 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.75 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.34 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.81 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.17 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.04 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.24 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.80 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.67 | MC |
| SRR4457244 | flag_leaf | DAH36 | 3.45 | MC |
| SRR1213691 | flower | wt | 1.70 | MC |
| SRR8060835 | leaf | wild_type | 0.25 | MC |
| SRR8060836 | leaf | wild_type | 0.67 | MC |
| SRR8060837 | leaf | wild_type | 0.92 | MC |
| SRR8240824 | leaf | wild_type | 2.01 | MC |
| SRR8240825 | leaf | wild_type | 1.02 | MC |
| SRR8240826 | leaf | wild_type | 0.95 | MC |
| SRR8240818 | leaf | wild_type | 1.00 | MC |
| SRR8240819 | leaf | wild_type | 1.97 | MC |
| SRR8240820 | leaf | wild_type | 2.16 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.94 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.93 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.99 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.75 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.97 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.94 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.99 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.59 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.44 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.55 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.48 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.94 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.18 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.22 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.28 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.89 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.71 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.72 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.07 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.65 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.53 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.78 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.56 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.92 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.25 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.47 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.25 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.12 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.97 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.92 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.73 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.89 | MC |
| SRR6417967 | leaf | H2O_control | 3.75 | MC |
| SRR6417968 | leaf | H2O_control | 2.44 | MC |
| SRR6417969 | leaf | H2O_control | 1.66 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.46 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.09 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.96 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.71 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.93 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.56 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.40 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.34 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.35 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 4.39 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.23 | MC |
| SRR5856927 | leaf | control | 0.60 | MC |
| SRR5856928 | leaf | control | 0.52 | MC |
| SRR5856929 | leaf | control | 0.54 | MC |
| SRR5856930 | leaf | salt | 0.81 | MC |
| SRR5856931 | leaf | salt | 0.80 | MC |
| SRR5856932 | leaf | salt | 0.52 | MC |
| SRR5856934 | leaf | control | 1.16 | MC |
| SRR5856935 | leaf | control | 0.75 | MC |
| SRR5856936 | leaf | salt | 0.97 | MC |
| SRR5856937 | leaf | salt | 0.71 | MC |
| SRR5856938 | leaf | salt | 1.07 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.64 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 4.14 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.81 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.64 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.30 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.36 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.56 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 3.01 | MC |
| SRR6168974 | leaf | none (control) | 2.93 | MC |
| SRR6168975 | leaf | none (control) | 2.57 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.81 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.08 | MC |
| SRR6168981 | leaf | none (control) | 2.15 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.03 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.86 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.09 | MC |
| SRR8582888 | panicle | AM | 2.51 | MC |
| SRR8582889 | panicle | AM | 0.28 | MC |
| SRR8582890 | panicle | AM | 0.83 | MC |
| SRR8582891 | panicle | PM | 0.48 | MC |
| SRR8582892 | panicle | PM | 7.22 | MC |
| SRR8582893 | panicle | PM | 2.76 | MC |
| SRR5110431 | panicle | Dawn | 4.07 | MC |
| SRR4947496 | root | control | 4.47 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.48 | MC |
| SRR5110437 | panicle | Dawn + 7h | 4.05 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.32 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.10 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.04 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.97 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.68 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 4.63 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 4.73 | MC |
| SRR5126149 | root | "mock,1_day" | 1.51 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.95 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.18 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.31 | MC |
| SRR5126153 | root | "mock,7_days" | 3.75 | MC |
| SRR5126155 | root | "mock,7_days" | 2.95 | MC |
| SRR5126157 | root | "mock,7_days" | 3.00 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.08 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.26 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.37 | MC |
| SRR5126165 | root | "mock,14_days" | 2.73 | MC |
| SRR5126167 | root | "mock,14_days" | 3.58 | MC |
| SRR5126169 | root | "mock,14_days" | 2.22 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.51 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.03 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.59 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.53 | MC |
| SRR1213695 | root | wt | 2.46 | MC |
| SRR4947479 | root | control | 4.34 | MC |
| SRR4947481 | root | control | 4.17 | MC |
| SRR4947482 | root | Al | 1.95 | MC |
| SRR4947483 | root | Al | 4.08 | MC |
| SRR4947484 | root | Al | 1.27 | MC |
| SRR4947485 | root | Al | 4.69 | MC |
| SRR4947487 | root | control | 0.98 | MC |
| SRR4947488 | root | control | 2.21 | MC |
| SRR4947490 | root | Al | 1.55 | MC |
| SRR4947491 | root | Al | 2.84 | MC |
| SRR4947492 | root | Al | 3.32 | MC |
| SRR4947494 | root | control | 3.16 | MC |
| SRR4947501 | root | Al | 5.49 | MC |
| SRR4947502 | root | control | 2.37 | MC |
| SRR4947503 | root | control | 4.52 | MC |
| SRR4947504 | root | control | 3.52 | MC |
| SRR4947506 | root | Al | 1.75 | MC |
| SRR4947508 | root | Al | 4.90 | MC |
| SRR1740432 | root_elongation_zone | wt | 3.14 | MC |
| SRR6441554 | seedling | wild_type | 0.91 | MC |
| SRR6441555 | seedling | wild_type | 1.73 | MC |
| SRR2154082 | seedling | wt | 2.48 | MC |
| SRR2154085 | seedling | wt | 2.32 | MC |
| SRR2154087 | seedling | wt | 1.99 | MC |
| SRR3098741 | seedling | wt | 1.85 | MC |
| SRR3098742 | seedling | wt | 1.35 | MC |
| SRR3098743 | seedling | wt | 1.01 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.67 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.81 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.76 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.00 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.62 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.47 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.64 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.42 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.89 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.32 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 4.32 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.99 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.96 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.66 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.00 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.54 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.38 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.49 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.36 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.35 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.03 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.14 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.75 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.70 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 5.84 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 4.05 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.23 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 4.39 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.77 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.43 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.86 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.19 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.81 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.67 | MC |