| SRR6320473 | carpel | wt | 3.85 | MC |
| SRR5560727 | caryopsis | wild_type | 0.49 | MC |
| SRR5560728 | caryopsis | wild_type | 1.34 | MC |
| SRR5560729 | caryopsis | wild_type | 1.21 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.87 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.13 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.56 | MC |
| SRR4947495 | root | control | 1.77 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.09 | MC |
| SRR7265403 | coleoptile | 2dN | 3.69 | MC |
| SRR7265404 | coleoptile | 2dN | 1.01 | MC |
| SRR7265405 | coleoptile | 2dN | 2.04 | MC |
| SRR7265409 | coleoptile | 3dN | 3.29 | MC |
| SRR7265411 | coleoptile | 3dN | 3.34 | MC |
| SRR7265413 | coleoptile | 4dA | 4.31 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.69 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.58 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.57 | MC |
| SRR7265376 | embryo | 1hA | 1.28 | MC |
| SRR7265377 | embryo | 1hA | 1.84 | MC |
| SRR7265378 | embryo | 1hA | 2.21 | MC |
| SRR7265379 | embryo | 1hN | 1.06 | MC |
| SRR7265383 | embryo | 3hA | 0.85 | MC |
| SRR7265384 | embryo | 3hA | 0.64 | MC |
| SRR7265386 | embryo | 3hN | 1.21 | MC |
| SRR7265387 | embryo | 3hN | 1.25 | MC |
| SRR7265390 | embryo | 12hA | 1.49 | MC |
| SRR7265395 | embryo | 24hA | 2.43 | MC |
| SRR7265396 | embryo | 24hA | 1.21 | MC |
| SRR2338866 | endosprem | control | 1.28 | MC |
| SRR8060835 | leaf | wild_type | 0.32 | MC |
| SRR8060836 | leaf | wild_type | 0.67 | MC |
| SRR8060837 | leaf | wild_type | 0.36 | MC |
| SRR8240819 | leaf | wild_type | 0.50 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.72 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.87 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.71 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.20 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.90 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.56 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.12 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.41 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.28 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.19 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.09 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.97 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.58 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.39 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 6.26 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.31 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.43 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.67 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.16 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.47 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.95 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.68 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.59 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.40 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.19 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.34 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.42 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.35 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.54 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.81 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.58 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.78 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.60 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.88 | MC |
| SRR1213693 | leaf | wt | 1.49 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 5.87 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 5.98 | MC |
| SRR6168973 | leaf | none (control) | 1.77 | MC |
| SRR6168974 | leaf | none (control) | 4.31 | MC |
| SRR6168975 | leaf | none (control) | 1.17 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.40 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.99 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.90 | MC |
| SRR6168979 | leaf | none (control) | 0.84 | MC |
| SRR8582888 | panicle | AM | 1.59 | MC |
| SRR8582889 | panicle | AM | 0.80 | MC |
| SRR8582890 | panicle | AM | 2.37 | MC |
| SRR8582893 | panicle | PM | 1.23 | MC |
| SRR4947496 | root | control | 2.07 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.76 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 4.77 | MC |
| SRR5126148 | root | "mock,1_day" | 1.53 | MC |
| SRR5126149 | root | "mock,1_day" | 1.37 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.86 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.07 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.34 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.98 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.81 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.22 | MC |
| SRR5126165 | root | "mock,14_days" | 2.49 | MC |
| SRR5126169 | root | "mock,14_days" | 2.59 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.53 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.65 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.21 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.23 | MC |
| SRR1213695 | root | wt | 2.63 | MC |
| SRR4947478 | root | control | 2.38 | MC |
| SRR4947481 | root | control | 0.99 | MC |
| SRR4947484 | root | Al | 1.88 | MC |
| SRR4947485 | root | Al | 1.61 | MC |
| SRR4947487 | root | control | 2.50 | MC |
| SRR4947488 | root | control | 2.99 | MC |
| SRR4947497 | root | control | 5.03 | MC |
| SRR4947499 | root | Al | 3.32 | MC |
| SRR4947500 | root | Al | 4.58 | MC |
| SRR4947502 | root | control | 3.62 | MC |
| SRR4947503 | root | control | 1.30 | MC |
| SRR4947504 | root | control | 3.08 | MC |
| SRR6441555 | seedling | wild_type | 2.94 | MC |
| SRR2154086 | seedling | wt | 2.66 | MC |
| SRR2154085 | seedling | wt | 2.54 | MC |
| SRR2154087 | seedling | wt | 1.43 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.70 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.21 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.68 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.81 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.34 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.40 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.04 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.56 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.67 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.91 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.01 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.74 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.28 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.03 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.39 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.66 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.83 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.62 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.58 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.13 | MC |