| SRR4457262 | 2nd_leaf | DAH36 | 5.05 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.02 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.91 | MC |
| SRR3745125 | anther | wt | 5.60 | MC |
| SRR6320498 | carpel | wt | 4.05 | MC |
| SRR5560727 | caryopsis | wild_type | 1.59 | MC |
| SRR5560728 | caryopsis | wild_type | 1.50 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.88 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.73 | MC |
| SRR4947495 | root | control | 2.93 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.49 | MC |
| SRR7265400 | coleoptile | 2dA | 1.66 | MC |
| SRR7265401 | coleoptile | 2dA | 2.13 | MC |
| SRR7265402 | coleoptile | 2dA | 0.95 | MC |
| SRR7265403 | coleoptile | 2dN | 1.33 | MC |
| SRR7265404 | coleoptile | 2dN | 1.18 | MC |
| SRR7265405 | coleoptile | 2dN | 1.18 | MC |
| SRR7265406 | coleoptile | 3dA | 1.68 | MC |
| SRR7265407 | coleoptile | 3dA | 1.25 | MC |
| SRR7265408 | coleoptile | 3dA | 2.81 | MC |
| SRR7265409 | coleoptile | 3dN | 2.46 | MC |
| SRR7265411 | coleoptile | 3dN | 1.46 | MC |
| SRR7265412 | coleoptile | 4dA | 0.85 | MC |
| SRR7265413 | coleoptile | 4dA | 1.56 | MC |
| SRR7265414 | coleoptile | 4dA | 1.05 | MC |
| SRR7265415 | coleoptile | 4dN | 0.94 | MC |
| SRR7265416 | coleoptile | 4dN | 3.21 | MC |
| SRR7265417 | coleoptile | 4dN | 1.17 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.52 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.32 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.74 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.75 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.49 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.93 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.60 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.24 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.54 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.80 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 3.20 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.62 | MC |
| SRR7265376 | embryo | 1hA | 1.79 | MC |
| SRR7265377 | embryo | 1hA | 0.95 | MC |
| SRR7265378 | embryo | 1hA | 1.34 | MC |
| SRR7265379 | embryo | 1hN | 0.91 | MC |
| SRR7265380 | embryo | 1hN | 1.58 | MC |
| SRR7265382 | embryo | 3hA | 3.68 | MC |
| SRR7265383 | embryo | 3hA | 1.23 | MC |
| SRR7265384 | embryo | 3hA | 1.70 | MC |
| SRR7265385 | embryo | 3hN | 1.32 | MC |
| SRR7265386 | embryo | 3hN | 1.97 | MC |
| SRR7265387 | embryo | 3hN | 0.34 | MC |
| SRR7265388 | embryo | 12hA | 3.77 | MC |
| SRR7265389 | embryo | 12hA | 3.32 | MC |
| SRR7265390 | embryo | 12hA | 1.72 | MC |
| SRR7265391 | embryo | 12hN | 1.02 | MC |
| SRR7265392 | embryo | 12hN | 2.99 | MC |
| SRR7265393 | embryo | 12hN | 2.43 | MC |
| SRR7265394 | embryo | 24hA | 3.45 | MC |
| SRR7265395 | embryo | 24hA | 2.55 | MC |
| SRR7265396 | embryo | 24hA | 0.94 | MC |
| SRR7265397 | embryo | 24hN | 4.16 | MC |
| SRR7265398 | embryo | 24hN | 1.69 | MC |
| SRR7265399 | embryo | 24hN | 1.64 | MC |
| SRR2338867 | endosprem | control | 0.58 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.83 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.62 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.83 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.57 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.57 | MC |
| SRR4457248 | flag_leaf | DAH44 | 4.20 | MC |
| SRR1213691 | flower | wt | 2.92 | MC |
| SRR8060836 | leaf | wild_type | 2.72 | MC |
| SRR8240824 | leaf | wild_type | 1.01 | MC |
| SRR8240825 | leaf | wild_type | 0.80 | MC |
| SRR8240826 | leaf | wild_type | 0.80 | MC |
| SRR8240818 | leaf | wild_type | 0.25 | MC |
| SRR8240819 | leaf | wild_type | 1.20 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.22 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.12 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.84 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.21 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.65 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.12 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.84 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.85 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.98 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.88 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.46 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.32 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.44 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.01 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.63 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.79 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.77 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.81 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.71 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.03 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.52 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.63 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.72 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.86 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 5.40 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.14 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.38 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.14 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.38 | MC |
| SRR1761528 | leaf | drought | 1.14 | MC |
| SRR1761531 | leaf | control | 4.38 | MC |
| SRR504365 | leaf | wt | 1.94 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.26 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.76 | MC |
| SRR6417968 | leaf | H2O_control | 1.80 | MC |
| SRR6417969 | leaf | H2O_control | 3.04 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.27 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.10 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.40 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.72 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.90 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.19 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.47 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.22 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.30 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.27 | MC |
| SRR6502089 | leaf | control | 1.29 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.44 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.75 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.03 | MC |
| SRR5856927 | leaf | control | 1.36 | MC |
| SRR5856928 | leaf | control | 1.89 | MC |
| SRR5856929 | leaf | control | 1.28 | MC |
| SRR5856931 | leaf | salt | 1.41 | MC |
| SRR5856933 | leaf | control | 2.42 | MC |
| SRR5856936 | leaf | salt | 1.56 | MC |
| SRR5856938 | leaf | salt | 1.86 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.56 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.08 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.34 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.17 | MC |
| SRR6168973 | leaf | none (control) | 1.70 | MC |
| SRR6168974 | leaf | none (control) | 2.38 | MC |
| SRR6168975 | leaf | none (control) | 0.41 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.76 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.82 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.34 | MC |
| SRR6168980 | leaf | none (control) | 1.56 | MC |
| SRR8582888 | panicle | AM | 2.81 | MC |
| SRR8582889 | panicle | AM | 1.40 | MC |
| SRR8582891 | panicle | PM | 3.54 | MC |
| SRR8582892 | panicle | PM | 6.45 | MC |
| SRR8582893 | panicle | PM | 2.82 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.30 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.93 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.66 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.27 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.85 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.81 | MC |
| SRR5110446 | panicle | Dusk | 1.36 | MC |
| SRR5110447 | panicle | Dusk | 1.83 | MC |
| SRR5110448 | panicle | Dusk | 2.75 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.30 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.35 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.62 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.41 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.73 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.79 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.25 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.53 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.66 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.94 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.40 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.35 | MC |
| SRR5126147 | root | "mock,1_day" | 1.03 | MC |
| SRR5126153 | root | "mock,7_days" | 0.73 | MC |
| SRR5126157 | root | "mock,7_days" | 5.27 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.97 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.12 | MC |
| SRR5126165 | root | "mock,14_days" | 4.60 | MC |
| SRR5126167 | root | "mock,14_days" | 1.41 | MC |
| SRR1213694 | root | wt | 1.92 | MC |
| SRR4947478 | root | control | 4.62 | MC |
| SRR4947482 | root | Al | 1.90 | MC |
| SRR4947483 | root | Al | 2.27 | MC |
| SRR4947484 | root | Al | 5.00 | MC |
| SRR4947485 | root | Al | 2.48 | MC |
| SRR4947488 | root | control | 0.92 | MC |
| SRR4947490 | root | Al | 1.02 | MC |
| SRR4947491 | root | Al | 3.29 | MC |
| SRR4947492 | root | Al | 3.43 | MC |
| SRR4947493 | root | Al | 3.94 | MC |
| SRR4947494 | root | control | 4.38 | MC |
| SRR4947497 | root | control | 4.43 | MC |
| SRR4947501 | root | Al | 4.65 | MC |
| SRR4947503 | root | control | 4.45 | MC |
| SRR4947504 | root | control | 3.26 | MC |
| SRR4947506 | root | Al | 3.39 | MC |
| SRR4947508 | root | Al | 3.83 | MC |
| SRR4947509 | root | Al | 3.31 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.53 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.52 | MC |
| SRR6502095 | root | control | 1.63 | MC |
| SRR6502105 | root | 100 mM NaCl | 4.36 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.82 | MC |
| SRR1740432 | root_elongation_zone | wt | 3.20 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.08 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.18 | MC |
| SRR6441554 | seedling | wild_type | 2.06 | MC |
| SRR6441555 | seedling | wild_type | 1.27 | MC |
| SRR2154086 | seedling | wt | 2.08 | MC |
| SRR2154082 | seedling | wt | 1.23 | MC |
| SRR2154085 | seedling | wt | 0.45 | MC |
| SRR2154087 | seedling | wt | 2.75 | MC |
| SRR3098742 | seedling | wt | 0.76 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.37 | MC |
| SRR358794 | seedling | wt | 1.12 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.68 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.43 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.20 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.50 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.56 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.61 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.66 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.46 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.61 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.34 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.81 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.46 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.40 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.06 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.09 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.70 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.21 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 5.73 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.36 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.63 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.82 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.05 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 7.34 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 6.64 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.99 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 5.71 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.98 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.68 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.66 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.05 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.04 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.83 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.04 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.25 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.09 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.87 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.03 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.78 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.98 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.08 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.11 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.66 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.55 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.61 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.89 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.84 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.78 | MC |