| SRR358796 | callus | wt | 1.25 | MC |
| SRR358797 | callus | wt | 1.68 | MC |
| SRR358798 | callus | wt | 1.20 | MC |
| SRR4947495 | root | control | 0.65 | MC |
| SRR7265400 | coleoptile | 2dA | 0.70 | MC |
| SRR7265401 | coleoptile | 2dA | 0.83 | MC |
| SRR7265402 | coleoptile | 2dA | 0.99 | MC |
| SRR7265403 | coleoptile | 2dN | 1.36 | MC |
| SRR7265404 | coleoptile | 2dN | 0.78 | MC |
| SRR7265405 | coleoptile | 2dN | 0.88 | MC |
| SRR7265409 | coleoptile | 3dN | 0.48 | MC |
| SRR7265410 | coleoptile | 3dN | 0.36 | MC |
| SRR7265411 | coleoptile | 3dN | 0.41 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.55 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.52 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.46 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.91 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.46 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.73 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.88 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.16 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.18 | MC |
| SRR7265382 | embryo | 3hA | 0.45 | MC |
| SRR7265384 | embryo | 3hA | 0.40 | MC |
| SRR7265388 | embryo | 12hA | 1.45 | MC |
| SRR7265389 | embryo | 12hA | 1.32 | MC |
| SRR7265390 | embryo | 12hA | 1.50 | MC |
| SRR7265391 | embryo | 12hN | 1.14 | MC |
| SRR7265392 | embryo | 12hN | 1.06 | MC |
| SRR7265393 | embryo | 12hN | 1.04 | MC |
| SRR7265394 | embryo | 24hA | 0.78 | MC |
| SRR7265395 | embryo | 24hA | 1.54 | MC |
| SRR7265396 | embryo | 24hA | 0.86 | MC |
| SRR7265397 | embryo | 24hN | 1.19 | MC |
| SRR7265398 | embryo | 24hN | 1.13 | MC |
| SRR7265399 | embryo | 24hN | 1.05 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.37 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.51 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.64 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.28 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.46 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.35 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.69 | MC |
| SRR5110429 | panicle | Dawn | 0.55 | MC |
| SRR5110432 | panicle | Dawn | 0.42 | MC |
| SRR5110446 | panicle | Dusk | 0.49 | MC |
| SRR5110447 | panicle | Dusk | 0.67 | MC |
| SRR5110448 | panicle | Dusk | 0.50 | MC |
| SRR1633182 | panicle | WT | 2.40 | MC |
| SRR1633185 | panicle | WT | 3.30 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.38 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.59 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.81 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.62 | MC |
| SRR5126147 | root | "mock,1_day" | 0.37 | MC |
| SRR5126148 | root | "mock,1_day" | 0.35 | MC |
| SRR5126153 | root | "mock,7_days" | 0.80 | MC |
| SRR5126155 | root | "mock,7_days" | 0.65 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.73 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.40 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.78 | MC |
| SRR5126165 | root | "mock,14_days" | 0.75 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.50 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.71 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.72 | MC |
| SRR4947481 | root | control | 0.70 | MC |
| SRR4947485 | root | Al | 0.53 | MC |
| SRR4947490 | root | Al | 0.62 | MC |
| SRR4947491 | root | Al | 0.76 | MC |
| SRR4947497 | root | control | 0.74 | MC |
| SRR4947498 | root | Al | 0.49 | MC |
| SRR4947499 | root | Al | 0.83 | MC |
| SRR4947501 | root | Al | 0.87 | MC |
| SRR4947502 | root | control | 0.86 | MC |
| SRR4947503 | root | control | 0.62 | MC |
| SRR4947504 | root | control | 0.63 | MC |
| SRR4947505 | root | control | 0.53 | MC |
| SRR4947507 | root | Al | 0.99 | MC |
| SRR4947509 | root | Al | 0.68 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.59 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.51 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.57 | MC |
| SRR6502095 | root | control | 0.67 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.58 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.61 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.61 | MC |
| SRR6502106 | root | control | 0.33 | MC |
| SRR6502107 | root | control | 0.55 | MC |
| SRR6502108 | root | control | 0.46 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.69 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.64 | MC |
| SRR2154086 | seedling | wt | 0.82 | MC |
| SRR2154082 | seedling | wt | 0.77 | MC |
| SRR2154083 | seedling | wt | 0.64 | MC |
| SRR2154084 | seedling | wt | 0.88 | MC |
| SRR2154087 | seedling | wt | 0.68 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.54 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.54 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.44 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.97 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.66 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.14 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.92 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.05 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.81 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.88 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.42 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 8.03 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 12.76 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.59 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.77 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.23 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 6.04 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.66 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.64 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 5.12 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 4.61 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.49 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.66 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.44 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.27 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.04 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.22 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.43 | MC |