| SRR4457249 | 2nd_leaf | DAH4 | 1.05 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.79 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.25 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.50 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.30 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.75 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.26 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.76 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.89 | MC |
| SRR358796 | callus | wt | 2.02 | MC |
| SRR358797 | callus | wt | 4.51 | MC |
| SRR6320473 | carpel | wt | 5.82 | MC |
| SRR7265400 | coleoptile | 2dA | 0.55 | MC |
| SRR7265401 | coleoptile | 2dA | 0.29 | MC |
| SRR7265402 | coleoptile | 2dA | 0.33 | MC |
| SRR7265403 | coleoptile | 2dN | 2.38 | MC |
| SRR7265404 | coleoptile | 2dN | 2.03 | MC |
| SRR7265405 | coleoptile | 2dN | 3.06 | MC |
| SRR7265409 | coleoptile | 3dN | 0.65 | MC |
| SRR7265411 | coleoptile | 3dN | 0.96 | MC |
| SRR7265412 | coleoptile | 4dA | 0.99 | MC |
| SRR7265413 | coleoptile | 4dA | 0.68 | MC |
| SRR7265415 | coleoptile | 4dN | 0.55 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.02 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.53 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.61 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.41 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.32 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.56 | MC |
| SRR7265379 | embryo | 1hN | 0.37 | MC |
| SRR7265383 | embryo | 3hA | 0.94 | MC |
| SRR7265384 | embryo | 3hA | 0.80 | MC |
| SRR7265385 | embryo | 3hN | 0.44 | MC |
| SRR7265388 | embryo | 12hA | 0.48 | MC |
| SRR7265389 | embryo | 12hA | 0.63 | MC |
| SRR7265390 | embryo | 12hA | 1.05 | MC |
| SRR7265391 | embryo | 12hN | 2.12 | MC |
| SRR7265394 | embryo | 24hA | 0.67 | MC |
| SRR7265395 | embryo | 24hA | 2.35 | MC |
| SRR7265396 | embryo | 24hA | 0.63 | MC |
| SRR7265397 | embryo | 24hN | 0.91 | MC |
| SRR7265398 | embryo | 24hN | 2.31 | MC |
| SRR7265399 | embryo | 24hN | 2.17 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.08 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.97 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.50 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.27 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.68 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.69 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.42 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.50 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.46 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.88 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.45 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.59 | MC |
| SRR8060835 | leaf | wild_type | 0.53 | MC |
| SRR8060836 | leaf | wild_type | 0.85 | MC |
| SRR8060837 | leaf | wild_type | 2.53 | MC |
| SRR8240825 | leaf | wild_type | 0.24 | MC |
| SRR8240818 | leaf | wild_type | 0.61 | MC |
| SRR8240819 | leaf | wild_type | 0.45 | MC |
| SRR8240820 | leaf | wild_type | 1.78 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.95 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.86 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.69 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.65 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.25 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.18 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.27 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.10 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.33 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.60 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.29 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.20 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.45 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.25 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.56 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.30 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.57 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.14 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.77 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.52 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.50 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.43 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.09 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.50 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.43 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.09 | MC |
| SRR1761529 | leaf | drought | 1.50 | MC |
| SRR1761530 | leaf | control | 0.43 | MC |
| SRR1761531 | leaf | control | 1.09 | MC |
| SRR504365 | leaf | wt | 1.12 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.65 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.77 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.21 | MC |
| SRR6417967 | leaf | H2O_control | 0.71 | MC |
| SRR6417968 | leaf | H2O_control | 2.81 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.28 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.47 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.68 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.23 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.02 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.15 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.57 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.01 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.40 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.94 | MC |
| SRR6502089 | leaf | control | 0.74 | MC |
| SRR6502090 | leaf | control | 0.37 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.32 | MC |
| SRR6502100 | leaf | control | 0.63 | MC |
| SRR6502101 | leaf | control | 0.50 | MC |
| SRR6502102 | leaf | control | 0.98 | MC |
| SRR5856928 | leaf | control | 0.59 | MC |
| SRR5856934 | leaf | control | 0.25 | MC |
| SRR5856936 | leaf | salt | 0.23 | MC |
| SRR5856937 | leaf | salt | 0.14 | MC |
| SRR6168973 | leaf | none (control) | 0.71 | MC |
| SRR6168975 | leaf | none (control) | 2.81 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.25 | MC |
| SRR8582893 | panicle | PM | 0.24 | MC |
| SRR5110431 | panicle | Dawn | 0.60 | MC |
| SRR5110432 | panicle | Dawn | 0.57 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.08 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.69 | MC |
| SRR5110445 | panicle | Dusk | 0.45 | MC |
| SRR5110446 | panicle | Dusk | 0.57 | MC |
| SRR5110448 | panicle | Dusk | 0.83 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.26 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.05 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.15 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.71 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.62 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.28 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.82 | MC |
| SRR5126149 | root | "mock,1_day" | 0.45 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.62 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.21 | MC |
| SRR5126157 | root | "mock,7_days" | 0.47 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.79 | MC |
| SRR5126165 | root | "mock,14_days" | 0.36 | MC |
| SRR5126167 | root | "mock,14_days" | 0.55 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.63 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.51 | MC |
| SRR1213694 | root | wt | 1.82 | MC |
| SRR4947482 | root | Al | 0.50 | MC |
| SRR4947506 | root | Al | 0.42 | MC |
| SRR4947508 | root | Al | 0.60 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.87 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.43 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.97 | MC |
| SRR6441554 | seedling | wild_type | 1.62 | MC |
| SRR6441555 | seedling | wild_type | 0.88 | MC |
| SRR2154086 | seedling | wt | 1.85 | MC |
| SRR2154083 | seedling | wt | 0.81 | MC |
| SRR2154085 | seedling | wt | 3.47 | MC |
| SRR3098742 | seedling | wt | 1.15 | MC |
| SRR3098743 | seedling | wt | 2.14 | MC |
| SRR358791 | seedling | wt | 1.79 | MC |
| SRR358792 | seedling | wt | 1.75 | MC |
| SRR358794 | seedling | wt | 0.83 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.29 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.47 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.56 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.83 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.66 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.11 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.45 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.29 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.17 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.07 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.88 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.49 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.37 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.54 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.67 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.68 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.72 | MC |