| SRR4457249 | 2nd_leaf | DAH4 | 1.03 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 3.14 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.51 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.21 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.07 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.22 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.14 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.37 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.43 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.09 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.13 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.89 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.42 | MC |
| SRR6320498 | carpel | wt | 1.50 | MC |
| SRR5560727 | caryopsis | wild_type | 1.29 | MC |
| SRR5560728 | caryopsis | wild_type | 1.96 | MC |
| SRR5560729 | caryopsis | wild_type | 0.60 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.29 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.31 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.38 | MC |
| SRR4947495 | root | control | 0.67 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.17 | MC |
| SRR7265401 | coleoptile | 2dA | 2.61 | MC |
| SRR7265402 | coleoptile | 2dA | 1.73 | MC |
| SRR7265407 | coleoptile | 3dA | 2.74 | MC |
| SRR7265414 | coleoptile | 4dA | 2.89 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.37 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.81 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.44 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.76 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.68 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.09 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.64 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.56 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.56 | MC |
| SRR7265374 | embryo | dry seed 0 h | 4.08 | MC |
| SRR7265391 | embryo | 12hN | 4.82 | MC |
| SRR2338867 | endosprem | control | 0.70 | MC |
| SRR2338869 | endosprem | high_temperature | 1.03 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.30 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.46 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.30 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.45 | MC |
| SRR8060835 | leaf | wild_type | 0.79 | MC |
| SRR8240819 | leaf | wild_type | 0.84 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.40 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.23 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.33 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.43 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.79 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.38 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.92 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.78 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.72 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.98 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.77 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.70 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.71 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.90 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.92 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.92 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.96 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.09 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.72 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.99 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.58 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.89 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.73 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.88 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.68 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.48 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.52 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.66 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.89 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.46 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.04 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.04 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.14 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 5.04 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.66 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.18 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.55 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.18 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.55 | MC |
| SRR1761530 | leaf | control | 1.18 | MC |
| SRR1761531 | leaf | control | 0.55 | MC |
| SRR504365 | leaf | wt | 1.34 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.26 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.36 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.82 | MC |
| SRR6417969 | leaf | H2O_control | 1.36 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.43 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.69 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.19 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 4.08 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.44 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.53 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.21 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.27 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.78 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.59 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.34 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.61 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.43 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.55 | MC |
| SRR1213692 | leaf | wt | 3.39 | MC |
| SRR1213693 | leaf | wt | 1.74 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.86 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.33 | MC |
| SRR6502088 | leaf | control | 2.08 | MC |
| SRR6502089 | leaf | control | 0.50 | MC |
| SRR6502090 | leaf | control | 0.38 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.46 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.03 | MC |
| SRR5856927 | leaf | control | 0.90 | MC |
| SRR5856929 | leaf | control | 0.69 | MC |
| SRR5856931 | leaf | salt | 0.37 | MC |
| SRR5856932 | leaf | salt | 0.29 | MC |
| SRR5856933 | leaf | control | 0.60 | MC |
| SRR5856934 | leaf | control | 0.59 | MC |
| SRR5856935 | leaf | control | 0.36 | MC |
| SRR5856936 | leaf | salt | 0.81 | MC |
| SRR5856937 | leaf | salt | 0.39 | MC |
| SRR5856938 | leaf | salt | 0.43 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.31 | MC |
| SRR6168973 | leaf | none (control) | 1.80 | MC |
| SRR6168975 | leaf | none (control) | 1.72 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.99 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 5.29 | MC |
| SRR6168979 | leaf | none (control) | 0.91 | MC |
| SRR6168980 | leaf | none (control) | 1.00 | MC |
| SRR6168981 | leaf | none (control) | 0.91 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.53 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.62 | MC |
| SRR8582888 | panicle | AM | 0.63 | MC |
| SRR8582889 | panicle | AM | 0.73 | MC |
| SRR8582890 | panicle | AM | 0.28 | MC |
| SRR8582891 | panicle | PM | 5.99 | MC |
| SRR8582892 | panicle | PM | 4.34 | MC |
| SRR8582893 | panicle | PM | 3.98 | MC |
| SRR5110430 | panicle | Dawn | 2.64 | MC |
| SRR4947496 | root | control | 2.12 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.40 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 4.01 | MC |
| SRR5110438 | panicle | Dawn + 7h | 4.14 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.87 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.10 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.51 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.13 | MC |
| SRR5110446 | panicle | Dusk | 4.29 | MC |
| SRR5110447 | panicle | Dusk | 1.53 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.76 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.39 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.50 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.80 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.76 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 3.24 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.30 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.62 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.78 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.54 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.14 | MC |
| SRR5126148 | root | "mock,1_day" | 0.98 | MC |
| SRR5126149 | root | "mock,1_day" | 2.66 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.27 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.69 | MC |
| SRR5126155 | root | "mock,7_days" | 1.56 | MC |
| SRR5126157 | root | "mock,7_days" | 1.10 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.96 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.77 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.18 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.39 | MC |
| SRR1213695 | root | wt | 2.59 | MC |
| SRR4947479 | root | control | 0.60 | MC |
| SRR4947480 | root | control | 0.76 | MC |
| SRR4947483 | root | Al | 1.67 | MC |
| SRR4947484 | root | Al | 0.54 | MC |
| SRR4947485 | root | Al | 5.04 | MC |
| SRR4947487 | root | control | 0.63 | MC |
| SRR4947490 | root | Al | 1.17 | MC |
| SRR4947491 | root | Al | 1.07 | MC |
| SRR4947492 | root | Al | 1.71 | MC |
| SRR4947497 | root | control | 0.92 | MC |
| SRR4947499 | root | Al | 1.11 | MC |
| SRR4947500 | root | Al | 1.80 | MC |
| SRR4947502 | root | control | 0.97 | MC |
| SRR4947503 | root | control | 2.08 | MC |
| SRR4947505 | root | control | 0.51 | MC |
| SRR4947506 | root | Al | 3.97 | MC |
| SRR4947508 | root | Al | 2.70 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.26 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.03 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.36 | MC |
| SRR6502106 | root | control | 1.72 | MC |
| SRR6502107 | root | control | 2.32 | MC |
| SRR6502108 | root | control | 3.58 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.48 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.69 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.35 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.80 | MC |
| SRR6441554 | seedling | wild_type | 1.35 | MC |
| SRR6441555 | seedling | wild_type | 1.74 | MC |
| SRR2154086 | seedling | wt | 3.23 | MC |
| SRR2154082 | seedling | wt | 1.41 | MC |
| SRR2154083 | seedling | wt | 0.78 | MC |
| SRR2154084 | seedling | wt | 1.68 | MC |
| SRR2154085 | seedling | wt | 1.73 | MC |
| SRR2154087 | seedling | wt | 1.58 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.55 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.51 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.71 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.74 | MC |
| SRR1944583 | seedling | no_treatment | 1.77 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.22 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.69 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.96 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.84 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.86 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.49 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.02 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.87 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.83 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.92 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.91 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.53 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.30 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.80 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.03 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.14 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.94 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.69 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.97 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.66 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.46 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.04 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 5.44 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 13.12 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 6.26 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.53 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.86 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.33 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.44 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.00 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.60 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.82 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.62 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.88 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.61 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.76 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.91 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.49 | MC |