| SRR4457249 | 2nd_leaf | DAH4 | 5.63 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 4.54 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 3.40 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 3.04 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 4.33 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.77 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.64 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.90 | MC |
| SRR5560728 | caryopsis | wild_type | 1.77 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.88 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.11 | MC |
| SRR4947495 | root | control | 3.40 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.74 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.48 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.89 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.11 | MC |
| SRR7265382 | embryo | 3hA | 4.76 | MC |
| SRR2338866 | endosprem | control | 2.01 | MC |
| SRR4457248 | flag_leaf | DAH44 | 3.39 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.34 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.48 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.17 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.91 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.90 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.30 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.04 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.57 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.79 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 5.35 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.94 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.79 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.17 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.97 | MC |
| SRR1213692 | leaf | wt | 4.17 | MC |
| SRR5856927 | leaf | control | 1.28 | MC |
| SRR5856929 | leaf | control | 2.11 | MC |
| SRR5856937 | leaf | salt | 1.39 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 6.86 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 6.06 | MC |
| SRR6168973 | leaf | none (control) | 1.15 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.86 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.72 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.91 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.57 | MC |
| SRR8582891 | panicle | PM | 3.98 | MC |
| SRR8582892 | panicle | PM | 5.36 | MC |
| SRR8582893 | panicle | PM | 3.20 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 4.70 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.40 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.27 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.74 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.43 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.63 | MC |
| SRR5110445 | panicle | Dusk | 3.47 | MC |
| SRR5110448 | panicle | Dusk | 5.15 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.43 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.83 | MC |
| SRR5126147 | root | "mock,1_day" | 3.79 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.86 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.22 | MC |
| SRR5126153 | root | "mock,7_days" | 4.04 | MC |
| SRR5126155 | root | "mock,7_days" | 3.95 | MC |
| SRR5126169 | root | "mock,14_days" | 4.21 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.98 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.66 | MC |
| SRR4947480 | root | control | 3.74 | MC |
| SRR4947485 | root | Al | 2.85 | MC |
| SRR4947487 | root | control | 3.33 | MC |
| SRR4947488 | root | control | 4.10 | MC |
| SRR4947490 | root | Al | 1.99 | MC |
| SRR4947493 | root | Al | 3.75 | MC |
| SRR4947498 | root | Al | 2.12 | MC |
| SRR4947501 | root | Al | 4.85 | MC |
| SRR4947503 | root | control | 3.64 | MC |
| SRR4947504 | root | control | 4.03 | MC |
| SRR358793 | seedling | wt | 5.63 | MC |
| SRR358794 | seedling | wt | 5.78 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.13 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.82 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.68 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.05 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.51 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.26 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.68 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.80 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.67 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.37 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.28 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.81 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.05 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.40 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.75 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.94 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.71 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 7.20 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.37 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.76 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.56 | MC |