| SRR5560727 | caryopsis | wild_type | 0.83 | MC |
| SRR5560728 | caryopsis | wild_type | 0.46 | MC |
| SRR5560729 | caryopsis | wild_type | 0.61 | MC |
| SRR4947495 | root | control | 1.28 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.05 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.36 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.29 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.15 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.79 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.62 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.93 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.05 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.49 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.69 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.22 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.43 | MC |
| SRR7265387 | embryo | 3hN | 0.24 | MC |
| SRR2338868 | endosprem | high_temperature | 0.86 | MC |
| SRR2338869 | endosprem | high_temperature | 0.73 | MC |
| SRR976168 | flag_leaf | wild_type | 0.52 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.30 | MC |
| SRR1213691 | flower | wt | 0.64 | MC |
| SRR8060835 | leaf | wild_type | 0.63 | MC |
| SRR8060836 | leaf | wild_type | 0.27 | MC |
| SRR8060837 | leaf | wild_type | 0.27 | MC |
| SRR8240824 | leaf | wild_type | 0.25 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.60 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.24 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.28 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.27 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.58 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.58 | MC |
| SRR1213693 | leaf | wt | 0.44 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.67 | MC |
| SRR5856927 | leaf | control | 0.68 | MC |
| SRR5856928 | leaf | control | 0.75 | MC |
| SRR5856929 | leaf | control | 0.88 | MC |
| SRR5856930 | leaf | salt | 0.48 | MC |
| SRR5856931 | leaf | salt | 0.22 | MC |
| SRR5856932 | leaf | salt | 0.20 | MC |
| SRR5856933 | leaf | control | 0.82 | MC |
| SRR5856934 | leaf | control | 0.66 | MC |
| SRR5856935 | leaf | control | 0.42 | MC |
| SRR5856936 | leaf | salt | 0.38 | MC |
| SRR5856937 | leaf | salt | 0.27 | MC |
| SRR5856938 | leaf | salt | 0.34 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.26 | MC |
| SRR5110429 | panicle | Dawn | 0.86 | MC |
| SRR5110430 | panicle | Dawn | 0.57 | MC |
| SRR4947496 | root | control | 1.03 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.21 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.78 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.54 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.98 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.37 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.52 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.84 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.07 | MC |
| SRR5110446 | panicle | Dusk | 1.37 | MC |
| SRR5110447 | panicle | Dusk | 1.93 | MC |
| SRR5110448 | panicle | Dusk | 0.56 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.67 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.73 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.22 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.54 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.41 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.61 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.44 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.53 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.26 | MC |
| SRR5126147 | root | "mock,1_day" | 0.97 | MC |
| SRR5126148 | root | "mock,1_day" | 0.76 | MC |
| SRR5126149 | root | "mock,1_day" | 0.60 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.97 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.08 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.05 | MC |
| SRR5126153 | root | "mock,7_days" | 0.73 | MC |
| SRR5126155 | root | "mock,7_days" | 0.77 | MC |
| SRR5126157 | root | "mock,7_days" | 0.43 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.52 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.95 | MC |
| SRR5126167 | root | "mock,14_days" | 0.63 | MC |
| SRR5126169 | root | "mock,14_days" | 1.53 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.46 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.63 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.84 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.37 | MC |
| SRR1213694 | root | wt | 0.53 | MC |
| SRR4947478 | root | control | 1.27 | MC |
| SRR4947479 | root | control | 1.48 | MC |
| SRR4947480 | root | control | 0.55 | MC |
| SRR4947481 | root | control | 0.59 | MC |
| SRR4947482 | root | Al | 1.23 | MC |
| SRR4947483 | root | Al | 0.40 | MC |
| SRR4947484 | root | Al | 0.56 | MC |
| SRR4947485 | root | Al | 0.96 | MC |
| SRR4947487 | root | control | 0.95 | MC |
| SRR4947489 | root | control | 1.05 | MC |
| SRR4947490 | root | Al | 0.98 | MC |
| SRR4947491 | root | Al | 1.76 | MC |
| SRR4947492 | root | Al | 0.68 | MC |
| SRR4947494 | root | control | 0.90 | MC |
| SRR4947497 | root | control | 2.18 | MC |
| SRR4947498 | root | Al | 2.63 | MC |
| SRR4947499 | root | Al | 1.31 | MC |
| SRR4947500 | root | Al | 1.72 | MC |
| SRR4947501 | root | Al | 0.95 | MC |
| SRR4947502 | root | control | 1.91 | MC |
| SRR4947503 | root | control | 0.79 | MC |
| SRR4947504 | root | control | 2.10 | MC |
| SRR4947505 | root | control | 1.36 | MC |
| SRR4947506 | root | Al | 1.80 | MC |
| SRR4947507 | root | Al | 1.94 | MC |
| SRR4947508 | root | Al | 1.20 | MC |
| SRR4947509 | root | Al | 1.45 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.89 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.74 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.41 | MC |
| SRR6502095 | root | control | 0.69 | MC |
| SRR6502096 | root | control | 0.69 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.44 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.35 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.86 | MC |
| SRR6502107 | root | control | 0.48 | MC |
| SRR6502108 | root | control | 1.02 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.26 | MC |
| SRR6441555 | seedling | wild_type | 0.47 | MC |
| SRR2154086 | seedling | wt | 0.69 | MC |
| SRR2154084 | seedling | wt | 0.58 | MC |
| SRR2154085 | seedling | wt | 0.43 | MC |
| SRR2154087 | seedling | wt | 0.64 | MC |
| SRR3098742 | seedling | wt | 0.22 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.95 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.45 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.45 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.37 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.45 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.99 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.20 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.39 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.36 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.70 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.31 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.34 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.72 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.49 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.78 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.30 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.34 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.77 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.83 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.83 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.75 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.62 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.57 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.61 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.97 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.79 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.04 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.01 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.73 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.50 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.09 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.46 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.05 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.72 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.20 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.08 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.33 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.02 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.77 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.97 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.40 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.68 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.75 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.19 | MC |