| SRR4457249 | 2nd_leaf | DAH4 | 1.06 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.84 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.81 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.58 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.09 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.29 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.75 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.99 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.89 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.67 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.52 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.92 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.98 | MC |
| SRR358795 | callus | wt | 1.09 | MC |
| SRR5560727 | caryopsis | wild_type | 2.94 | MC |
| SRR5560728 | caryopsis | wild_type | 1.48 | MC |
| SRR5560729 | caryopsis | wild_type | 1.67 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.68 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.00 | MC |
| SRR4947495 | root | control | 4.04 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.84 | MC |
| SRR7265401 | coleoptile | 2dA | 3.40 | MC |
| SRR7265406 | coleoptile | 3dA | 2.19 | MC |
| SRR7265407 | coleoptile | 3dA | 1.78 | MC |
| SRR7265408 | coleoptile | 3dA | 1.98 | MC |
| SRR7265409 | coleoptile | 3dN | 3.20 | MC |
| SRR7265410 | coleoptile | 3dN | 2.85 | MC |
| SRR7265411 | coleoptile | 3dN | 2.23 | MC |
| SRR7265413 | coleoptile | 4dA | 2.42 | MC |
| SRR7265414 | coleoptile | 4dA | 1.80 | MC |
| SRR7265415 | coleoptile | 4dN | 2.86 | MC |
| SRR7265416 | coleoptile | 4dN | 2.13 | MC |
| SRR7265417 | coleoptile | 4dN | 3.09 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.17 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.92 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.55 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.10 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.55 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.72 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.47 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.37 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.85 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.68 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 4.25 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.25 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.56 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.03 | MC |
| SRR7265376 | embryo | 1hA | 0.97 | MC |
| SRR7265377 | embryo | 1hA | 1.71 | MC |
| SRR7265378 | embryo | 1hA | 1.91 | MC |
| SRR7265379 | embryo | 1hN | 0.40 | MC |
| SRR7265380 | embryo | 1hN | 1.07 | MC |
| SRR7265381 | embryo | 1hN | 1.35 | MC |
| SRR7265382 | embryo | 3hA | 1.04 | MC |
| SRR7265383 | embryo | 3hA | 2.08 | MC |
| SRR7265384 | embryo | 3hA | 1.26 | MC |
| SRR7265385 | embryo | 3hN | 1.86 | MC |
| SRR7265386 | embryo | 3hN | 2.58 | MC |
| SRR7265387 | embryo | 3hN | 2.00 | MC |
| SRR7265394 | embryo | 24hA | 1.82 | MC |
| SRR7265398 | embryo | 24hN | 1.50 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.27 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.63 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.27 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.55 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.37 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.59 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.65 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.22 | MC |
| SRR8060835 | leaf | wild_type | 0.44 | MC |
| SRR8060836 | leaf | wild_type | 1.39 | MC |
| SRR8060837 | leaf | wild_type | 0.77 | MC |
| SRR8240819 | leaf | wild_type | 0.76 | MC |
| SRR8240820 | leaf | wild_type | 0.27 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.38 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.74 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.40 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.64 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.58 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.42 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.43 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.69 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.79 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.03 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.70 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.68 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.33 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.67 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.22 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.71 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.60 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.60 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.04 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.39 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.41 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.41 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.81 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.42 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.88 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.32 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.32 | MC |
| SRR1761531 | leaf | control | 1.32 | MC |
| SRR504365 | leaf | wt | 0.40 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.93 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.97 | MC |
| SRR6417968 | leaf | H2O_control | 2.48 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.29 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.91 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.14 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.33 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.36 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.88 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.76 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.05 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.56 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.21 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.73 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.46 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.66 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.58 | MC |
| SRR1213692 | leaf | wt | 4.13 | MC |
| SRR1213693 | leaf | wt | 2.88 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.78 | MC |
| SRR6502088 | leaf | control | 2.48 | MC |
| SRR6502090 | leaf | control | 4.01 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.45 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.41 | MC |
| SRR5856927 | leaf | control | 0.62 | MC |
| SRR5856928 | leaf | control | 1.18 | MC |
| SRR5856929 | leaf | control | 1.21 | MC |
| SRR5856930 | leaf | salt | 0.59 | MC |
| SRR5856931 | leaf | salt | 0.76 | MC |
| SRR5856933 | leaf | control | 2.06 | MC |
| SRR5856934 | leaf | control | 0.78 | MC |
| SRR5856935 | leaf | control | 0.49 | MC |
| SRR5856936 | leaf | salt | 0.69 | MC |
| SRR5856938 | leaf | salt | 0.76 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 4.73 | MC |
| SRR6168973 | leaf | none (control) | 2.07 | MC |
| SRR6168974 | leaf | none (control) | 2.89 | MC |
| SRR6168975 | leaf | none (control) | 3.85 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 5.19 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 4.19 | MC |
| SRR6168979 | leaf | none (control) | 1.31 | MC |
| SRR6168981 | leaf | none (control) | 0.72 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.46 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.49 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.13 | MC |
| SRR8582890 | panicle | AM | 0.34 | MC |
| SRR8582893 | panicle | PM | 1.59 | MC |
| SRR5110430 | panicle | Dawn | 1.44 | MC |
| SRR5110431 | panicle | Dawn | 1.80 | MC |
| SRR4947496 | root | control | 3.28 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.08 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.64 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.99 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.09 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.16 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.08 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.70 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.48 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.83 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.81 | MC |
| SRR1633185 | panicle | WT | 0.52 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.76 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.88 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.95 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.49 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.32 | MC |
| SRR5126147 | root | "mock,1_day" | 3.64 | MC |
| SRR5126148 | root | "mock,1_day" | 1.73 | MC |
| SRR5126149 | root | "mock,1_day" | 1.51 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.53 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.39 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.31 | MC |
| SRR5126153 | root | "mock,7_days" | 2.92 | MC |
| SRR5126155 | root | "mock,7_days" | 1.63 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.33 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.83 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.63 | MC |
| SRR5126165 | root | "mock,14_days" | 0.68 | MC |
| SRR5126169 | root | "mock,14_days" | 0.96 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.12 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.47 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.36 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.57 | MC |
| SRR1213694 | root | wt | 1.66 | MC |
| SRR1213695 | root | wt | 2.39 | MC |
| SRR4947478 | root | control | 3.23 | MC |
| SRR4947479 | root | control | 3.00 | MC |
| SRR4947480 | root | control | 5.11 | MC |
| SRR4947481 | root | control | 2.63 | MC |
| SRR4947482 | root | Al | 2.31 | MC |
| SRR4947483 | root | Al | 3.58 | MC |
| SRR4947484 | root | Al | 3.59 | MC |
| SRR4947488 | root | control | 3.49 | MC |
| SRR4947489 | root | control | 1.13 | MC |
| SRR4947490 | root | Al | 3.60 | MC |
| SRR4947494 | root | control | 1.94 | MC |
| SRR4947498 | root | Al | 5.34 | MC |
| SRR4947500 | root | Al | 3.67 | MC |
| SRR4947502 | root | control | 4.92 | MC |
| SRR4947504 | root | control | 1.22 | MC |
| SRR4947506 | root | Al | 2.68 | MC |
| SRR4947508 | root | Al | 4.92 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.82 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.99 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.27 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.68 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.34 | MC |
| SRR6502106 | root | control | 0.52 | MC |
| SRR6502107 | root | control | 2.46 | MC |
| SRR6502108 | root | control | 4.79 | MC |
| SRR6441555 | seedling | wild_type | 1.60 | MC |
| SRR2154083 | seedling | wt | 3.56 | MC |
| SRR2154084 | seedling | wt | 1.39 | MC |
| SRR3098741 | seedling | wt | 1.23 | MC |
| SRR3098742 | seedling | wt | 0.68 | MC |
| SRR3098743 | seedling | wt | 2.12 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.73 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.72 | MC |
| SRR1944583 | seedling | no_treatment | 2.96 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.84 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.00 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.24 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.10 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.03 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.88 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.21 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.58 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.77 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.33 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.33 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.60 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.07 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.03 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 6.35 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.13 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.21 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.75 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.63 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 5.53 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.89 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 7.16 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 7.53 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 6.12 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 7.56 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.75 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.09 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.23 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.93 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.42 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.49 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.72 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.76 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.70 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.56 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.77 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.07 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.95 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.76 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.40 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.25 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.69 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.73 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.94 | MC |