| SRR4457252 | 2nd_leaf | DAH12 | 2.48 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.69 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.49 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 4.27 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.55 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 3.91 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.78 | MC |
| SRR6320498 | carpel | wt | 5.67 | MC |
| SRR5560727 | caryopsis | wild_type | 2.34 | MC |
| SRR5560728 | caryopsis | wild_type | 3.55 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.40 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.51 | MC |
| SRR4947495 | root | control | 4.89 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.88 | MC |
| SRR7265402 | coleoptile | 2dA | 2.25 | MC |
| SRR7265403 | coleoptile | 2dN | 3.16 | MC |
| SRR7265405 | coleoptile | 2dN | 2.52 | MC |
| SRR7265409 | coleoptile | 3dN | 4.03 | MC |
| SRR7265412 | coleoptile | 4dA | 1.25 | MC |
| SRR7265414 | coleoptile | 4dA | 3.19 | MC |
| SRR7265416 | coleoptile | 4dN | 4.10 | MC |
| SRR7265417 | coleoptile | 4dN | 2.67 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.88 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.52 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.80 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.43 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.41 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.76 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.47 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.77 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.90 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.61 | MC |
| SRR7265377 | embryo | 1hA | 1.96 | MC |
| SRR7265378 | embryo | 1hA | 0.46 | MC |
| SRR7265380 | embryo | 1hN | 1.04 | MC |
| SRR7265385 | embryo | 3hN | 3.77 | MC |
| SRR7265389 | embryo | 12hA | 3.48 | MC |
| SRR7265398 | embryo | 24hN | 3.74 | MC |
| SRR2338866 | endosprem | control | 2.43 | MC |
| SRR2338867 | endosprem | control | 2.11 | MC |
| SRR2338869 | endosprem | high_temperature | 3.16 | MC |
| SRR976168 | flag_leaf | wild_type | 1.42 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.73 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.36 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.08 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.66 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.60 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.56 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.27 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.74 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.04 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.44 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.97 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.53 | MC |
| SRR4457248 | flag_leaf | DAH44 | 5.78 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.78 | MC |
| SRR8240824 | leaf | wild_type | 2.13 | MC |
| SRR8240825 | leaf | wild_type | 1.94 | MC |
| SRR8240826 | leaf | wild_type | 1.06 | MC |
| SRR8240818 | leaf | wild_type | 0.33 | MC |
| SRR8240819 | leaf | wild_type | 1.54 | MC |
| SRR8240820 | leaf | wild_type | 0.44 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.66 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.86 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.91 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.97 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.42 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.59 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.62 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.16 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.07 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.41 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.19 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.70 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.82 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.86 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.07 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.71 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.15 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.51 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.80 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.78 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.80 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.88 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.85 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.92 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.56 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.91 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.99 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.08 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.37 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.71 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.70 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.46 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 4.23 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.58 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.09 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.46 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 4.23 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.58 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.09 | MC |
| SRR1761528 | leaf | drought | 3.46 | MC |
| SRR1761529 | leaf | drought | 4.23 | MC |
| SRR1761530 | leaf | control | 4.58 | MC |
| SRR1761531 | leaf | control | 4.09 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.11 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.36 | MC |
| SRR6417967 | leaf | H2O_control | 2.37 | MC |
| SRR6417968 | leaf | H2O_control | 0.41 | MC |
| SRR6417969 | leaf | H2O_control | 2.18 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 3.18 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.97 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.15 | MC |
| SRR1213692 | leaf | wt | 2.01 | MC |
| SRR6502101 | leaf | control | 2.02 | MC |
| SRR5856927 | leaf | control | 0.61 | MC |
| SRR5856928 | leaf | control | 0.90 | MC |
| SRR5856929 | leaf | control | 0.29 | MC |
| SRR5856930 | leaf | salt | 0.83 | MC |
| SRR5856931 | leaf | salt | 1.15 | MC |
| SRR5856932 | leaf | salt | 0.26 | MC |
| SRR5856933 | leaf | control | 2.02 | MC |
| SRR5856934 | leaf | control | 1.10 | MC |
| SRR5856935 | leaf | control | 0.31 | MC |
| SRR5856936 | leaf | salt | 0.39 | MC |
| SRR5856937 | leaf | salt | 1.22 | MC |
| SRR5856938 | leaf | salt | 0.30 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 4.68 | MC |
| SRR6168973 | leaf | none (control) | 0.34 | MC |
| SRR6168974 | leaf | none (control) | 4.32 | MC |
| SRR6168975 | leaf | none (control) | 2.85 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.20 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.97 | MC |
| SRR6168979 | leaf | none (control) | 0.44 | MC |
| SRR6168980 | leaf | none (control) | 0.65 | MC |
| SRR6168981 | leaf | none (control) | 0.39 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.60 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.30 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.24 | MC |
| SRR4947496 | root | control | 4.53 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.17 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.47 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.58 | MC |
| SRR5110446 | panicle | Dusk | 2.73 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.01 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.34 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.95 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.44 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.33 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.50 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.78 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.37 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.76 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.26 | MC |
| SRR5126147 | root | "mock,1_day" | 1.86 | MC |
| SRR5126149 | root | "mock,1_day" | 1.79 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.88 | MC |
| SRR5126157 | root | "mock,7_days" | 4.60 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.38 | MC |
| SRR5126167 | root | "mock,14_days" | 2.91 | MC |
| SRR5126169 | root | "mock,14_days" | 4.37 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.63 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 5.19 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.55 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.84 | MC |
| SRR1213694 | root | wt | 1.93 | MC |
| SRR1213695 | root | wt | 2.07 | MC |
| SRR4947481 | root | control | 5.27 | MC |
| SRR4947504 | root | control | 5.15 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.76 | MC |
| SRR6502096 | root | control | 1.97 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.94 | MC |
| SRR6502107 | root | control | 2.11 | MC |
| SRR1740432 | root_elongation_zone | wt | 3.34 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.54 | MC |
| SRR6441554 | seedling | wild_type | 2.37 | MC |
| SRR6441555 | seedling | wild_type | 2.18 | MC |
| SRR2154083 | seedling | wt | 2.26 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.67 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.57 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.85 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.85 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.75 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.76 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.21 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.29 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.22 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.02 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.31 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.22 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.30 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 10.39 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 10.04 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.84 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 6.68 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.34 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.63 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 4.48 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 7.09 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.76 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 10.67 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 8.44 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.38 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.21 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.32 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.55 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.07 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.67 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.65 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.58 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.46 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.21 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.49 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.48 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.24 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.84 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.74 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.42 | MC |