| SRR4457252 | 2nd_leaf | DAH12 | 0.54 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.62 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.39 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.14 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.54 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.94 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.68 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.47 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.65 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.01 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.01 | MC |
| SRR5560729 | caryopsis | wild_type | 0.87 | MC |
| SRR7265400 | coleoptile | 2dA | 1.22 | MC |
| SRR7265404 | coleoptile | 2dN | 0.33 | MC |
| SRR7265405 | coleoptile | 2dN | 0.91 | MC |
| SRR7265409 | coleoptile | 3dN | 0.83 | MC |
| SRR7265410 | coleoptile | 3dN | 0.85 | MC |
| SRR7265411 | coleoptile | 3dN | 0.52 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.55 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.41 | MC |
| SRR7265378 | embryo | 1hA | 0.74 | MC |
| SRR7265381 | embryo | 1hN | 0.72 | MC |
| SRR7265386 | embryo | 3hN | 1.04 | MC |
| SRR7265387 | embryo | 3hN | 0.88 | MC |
| SRR7265388 | embryo | 12hA | 1.40 | MC |
| SRR7265389 | embryo | 12hA | 2.37 | MC |
| SRR7265390 | embryo | 12hA | 0.53 | MC |
| SRR7265394 | embryo | 24hA | 1.85 | MC |
| SRR7265395 | embryo | 24hA | 0.86 | MC |
| SRR7265397 | embryo | 24hN | 1.27 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.41 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.76 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.37 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.44 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.09 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.86 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.81 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.42 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.76 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.46 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.79 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.30 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.26 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.70 | MC |
| SRR1213691 | flower | wt | 1.21 | MC |
| SRR8060835 | leaf | wild_type | 0.32 | MC |
| SRR8060836 | leaf | wild_type | 0.95 | MC |
| SRR8060837 | leaf | wild_type | 0.34 | MC |
| SRR8240819 | leaf | wild_type | 0.25 | MC |
| SRR8240820 | leaf | wild_type | 0.45 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.61 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.47 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.33 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.78 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.95 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.83 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.81 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.81 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.58 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.68 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.70 | MC |
| SRR504365 | leaf | wt | 1.38 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.53 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.43 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.11 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.26 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.46 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.79 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.26 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.75 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.56 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.59 | MC |
| SRR1213693 | leaf | wt | 0.66 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.35 | MC |
| SRR5856927 | leaf | control | 0.29 | MC |
| SRR5856932 | leaf | salt | 0.33 | MC |
| SRR5856938 | leaf | salt | 0.22 | MC |
| SRR6168974 | leaf | none (control) | 0.70 | MC |
| SRR6168980 | leaf | none (control) | 0.30 | MC |
| SRR5110429 | panicle | Dawn | 0.45 | MC |
| SRR5110445 | panicle | Dusk | 0.51 | MC |
| SRR5110448 | panicle | Dusk | 0.78 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.93 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.43 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.24 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.43 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.96 | MC |
| SRR5126148 | root | "mock,1_day" | 0.31 | MC |
| SRR5126149 | root | "mock,1_day" | 1.24 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.71 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.96 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.67 | MC |
| SRR5126153 | root | "mock,7_days" | 0.74 | MC |
| SRR5126157 | root | "mock,7_days" | 0.60 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.05 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.16 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.44 | MC |
| SRR5126165 | root | "mock,14_days" | 2.02 | MC |
| SRR5126169 | root | "mock,14_days" | 0.35 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.63 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.64 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.81 | MC |
| SRR1213695 | root | wt | 1.09 | MC |
| SRR6502108 | root | control | 0.79 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.98 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.67 | MC |
| SRR6441554 | seedling | wild_type | 0.61 | MC |
| SRR6441555 | seedling | wild_type | 0.49 | MC |
| SRR3098743 | seedling | wt | 0.52 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.55 | MC |
| SRR358791 | seedling | wt | 2.41 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.93 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.29 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.48 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.58 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.57 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.36 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.49 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.09 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.58 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.47 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.77 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.74 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.95 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.77 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.31 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.06 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.62 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.14 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.75 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.79 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.74 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.44 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.96 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.81 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.66 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.50 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.43 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.72 | MC |