| SRR4457251 | 2nd_leaf | DAH4 | 0.31 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.35 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.55 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.43 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.43 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.65 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.66 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.39 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.43 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.59 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.71 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.47 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.92 | MC |
| SRR3745126 | anther | wt | 0.54 | MC |
| SRR3745127 | anther | wt | 0.60 | MC |
| SRR358796 | callus | wt | 1.06 | MC |
| SRR358797 | callus | wt | 0.92 | MC |
| SRR358798 | callus | wt | 1.08 | MC |
| SRR5560729 | caryopsis | wild_type | 0.33 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.71 | MC |
| SRR7265400 | coleoptile | 2dA | 1.23 | MC |
| SRR7265401 | coleoptile | 2dA | 2.02 | MC |
| SRR7265402 | coleoptile | 2dA | 1.68 | MC |
| SRR7265403 | coleoptile | 2dN | 1.89 | MC |
| SRR7265404 | coleoptile | 2dN | 1.01 | MC |
| SRR7265405 | coleoptile | 2dN | 1.49 | MC |
| SRR7265406 | coleoptile | 3dA | 2.21 | MC |
| SRR7265407 | coleoptile | 3dA | 2.36 | MC |
| SRR7265408 | coleoptile | 3dA | 2.05 | MC |
| SRR7265409 | coleoptile | 3dN | 1.07 | MC |
| SRR7265410 | coleoptile | 3dN | 0.68 | MC |
| SRR7265411 | coleoptile | 3dN | 0.81 | MC |
| SRR7265412 | coleoptile | 4dA | 1.13 | MC |
| SRR7265413 | coleoptile | 4dA | 1.13 | MC |
| SRR7265414 | coleoptile | 4dA | 1.40 | MC |
| SRR7265415 | coleoptile | 4dN | 0.86 | MC |
| SRR7265416 | coleoptile | 4dN | 0.95 | MC |
| SRR7265417 | coleoptile | 4dN | 1.04 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.98 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.62 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.10 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.32 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.18 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.22 | MC |
| SRR7265376 | embryo | 1hA | 2.13 | MC |
| SRR7265377 | embryo | 1hA | 1.54 | MC |
| SRR7265378 | embryo | 1hA | 1.90 | MC |
| SRR7265379 | embryo | 1hN | 1.75 | MC |
| SRR7265380 | embryo | 1hN | 1.53 | MC |
| SRR7265381 | embryo | 1hN | 1.42 | MC |
| SRR7265382 | embryo | 3hA | 2.18 | MC |
| SRR7265383 | embryo | 3hA | 2.00 | MC |
| SRR7265384 | embryo | 3hA | 2.49 | MC |
| SRR7265385 | embryo | 3hN | 2.87 | MC |
| SRR7265386 | embryo | 3hN | 2.12 | MC |
| SRR7265387 | embryo | 3hN | 2.30 | MC |
| SRR7265388 | embryo | 12hA | 2.53 | MC |
| SRR7265389 | embryo | 12hA | 1.28 | MC |
| SRR7265390 | embryo | 12hA | 1.60 | MC |
| SRR7265391 | embryo | 12hN | 1.26 | MC |
| SRR7265392 | embryo | 12hN | 1.11 | MC |
| SRR7265393 | embryo | 12hN | 0.97 | MC |
| SRR7265394 | embryo | 24hA | 0.97 | MC |
| SRR7265395 | embryo | 24hA | 1.43 | MC |
| SRR7265396 | embryo | 24hA | 1.18 | MC |
| SRR7265397 | embryo | 24hN | 1.39 | MC |
| SRR7265398 | embryo | 24hN | 0.76 | MC |
| SRR7265399 | embryo | 24hN | 1.77 | MC |
| SRR976168 | flag_leaf | wild_type | 0.45 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.40 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.32 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.32 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.40 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.46 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.30 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.61 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.61 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.58 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.41 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.02 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.51 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.48 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.56 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.37 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.60 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.38 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.54 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.50 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.45 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.44 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.64 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.46 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.52 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.86 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.48 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.46 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.59 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.53 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.44 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.47 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.50 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.99 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.69 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.91 | MC |
| SRR1761528 | leaf | drought | 0.82 | MC |
| SRR1761529 | leaf | drought | 0.95 | MC |
| SRR504365 | leaf | wt | 0.35 | MC |
| SRR6417969 | leaf | H2O_control | 0.39 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.75 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.81 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.34 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.19 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.40 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.65 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.79 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.86 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.48 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.82 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.74 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.15 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.38 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.31 | MC |
| SRR1213692 | leaf | wt | 0.89 | MC |
| SRR1213693 | leaf | wt | 0.70 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.40 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.42 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.01 | MC |
| SRR6502088 | leaf | control | 1.31 | MC |
| SRR6502089 | leaf | control | 1.60 | MC |
| SRR6502090 | leaf | control | 0.99 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.42 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.57 | MC |
| SRR6168979 | leaf | none (control) | 0.36 | MC |
| SRR6168980 | leaf | none (control) | 0.26 | MC |
| SRR6168981 | leaf | none (control) | 0.26 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.34 | MC |
| SRR8582889 | panicle | AM | 0.11 | MC |
| SRR8582890 | panicle | AM | 0.19 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.17 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.65 | MC |
| SRR1633182 | panicle | WT | 0.35 | MC |
| SRR1633185 | panicle | WT | 0.36 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.77 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.31 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.02 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.91 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.74 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.54 | MC |
| SRR5126155 | root | "mock,7_days" | 0.34 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.21 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.54 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.77 | MC |
| SRR5126165 | root | "mock,14_days" | 0.34 | MC |
| SRR5126167 | root | "mock,14_days" | 1.74 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.22 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.12 | MC |
| SRR1213694 | root | wt | 2.48 | MC |
| SRR1213695 | root | wt | 0.65 | MC |
| SRR4947488 | root | control | 0.64 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.81 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.60 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.64 | MC |
| SRR6502094 | root | control | 2.73 | MC |
| SRR6502095 | root | control | 2.19 | MC |
| SRR6502096 | root | control | 1.80 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.44 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.37 | MC |
| SRR6502106 | root | control | 0.68 | MC |
| SRR6502107 | root | control | 0.83 | MC |
| SRR6502108 | root | control | 0.44 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.76 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.34 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.25 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.62 | MC |
| SRR6441554 | seedling | wild_type | 0.54 | MC |
| SRR6441555 | seedling | wild_type | 0.45 | MC |
| SRR2154086 | seedling | wt | 0.48 | MC |
| SRR3098741 | seedling | wt | 0.33 | MC |
| SRR3098742 | seedling | wt | 0.30 | MC |
| SRR3098743 | seedling | wt | 0.19 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.52 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.26 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.93 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.80 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.93 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.29 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.09 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.00 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.48 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.45 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.39 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.47 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.55 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.40 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.59 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.37 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.38 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.62 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.43 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.60 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.33 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.01 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.41 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.38 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.92 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.58 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.72 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.35 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.83 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.64 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.62 | MC |