| SRR4457250 | 2nd_leaf | DAH4 | 3.00 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.89 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.64 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.92 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.56 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.75 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.29 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.73 | MC |
| SRR3745126 | anther | wt | 3.28 | MC |
| SRR6320473 | carpel | wt | 3.12 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.97 | MC |
| SRR7265406 | coleoptile | 3dA | 0.76 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.45 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.86 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.94 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.49 | MC |
| SRR7265374 | embryo | dry seed 0 h | 4.24 | MC |
| SRR7265378 | embryo | 1hA | 0.49 | MC |
| SRR7265384 | embryo | 3hA | 2.63 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.43 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.86 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.74 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.04 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.58 | MC |
| SRR4457236 | flag_leaf | DAH12 | 3.24 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.16 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.70 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.45 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.35 | MC |
| SRR1213691 | flower | wt | 1.40 | MC |
| SRR8060835 | leaf | wild_type | 1.05 | MC |
| SRR8060836 | leaf | wild_type | 1.35 | MC |
| SRR8060837 | leaf | wild_type | 0.38 | MC |
| SRR8240825 | leaf | wild_type | 2.52 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.18 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.41 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.76 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.98 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.54 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.92 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.93 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.97 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.84 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.39 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.82 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.32 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.78 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.91 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.13 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.06 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.81 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.86 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.97 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.86 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.97 | MC |
| SRR1761529 | leaf | drought | 0.86 | MC |
| SRR1761531 | leaf | control | 0.97 | MC |
| SRR6417968 | leaf | H2O_control | 1.34 | MC |
| SRR6417969 | leaf | H2O_control | 1.02 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.69 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.14 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.53 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.37 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.23 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.49 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.91 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.14 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.58 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.90 | MC |
| SRR1213693 | leaf | wt | 2.52 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.69 | MC |
| SRR6502089 | leaf | control | 2.09 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.30 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.76 | MC |
| SRR5856929 | leaf | control | 0.51 | MC |
| SRR5856930 | leaf | salt | 0.95 | MC |
| SRR5856935 | leaf | control | 0.27 | MC |
| SRR5856936 | leaf | salt | 0.49 | MC |
| SRR6168973 | leaf | none (control) | 2.93 | MC |
| SRR6168974 | leaf | none (control) | 0.95 | MC |
| SRR6168980 | leaf | none (control) | 1.64 | MC |
| SRR6168981 | leaf | none (control) | 2.30 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.59 | MC |
| SRR8582889 | panicle | AM | 0.11 | MC |
| SRR8582890 | panicle | AM | 0.32 | MC |
| SRR8582891 | panicle | PM | 0.75 | MC |
| SRR5110432 | panicle | Dawn | 1.92 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.84 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.47 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.15 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.56 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.24 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.50 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.09 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.46 | MC |
| SRR5126153 | root | "mock,7_days" | 0.78 | MC |
| SRR5126155 | root | "mock,7_days" | 0.45 | MC |
| SRR5126157 | root | "mock,7_days" | 0.61 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.94 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.54 | MC |
| SRR5126165 | root | "mock,14_days" | 1.34 | MC |
| SRR5126167 | root | "mock,14_days" | 0.31 | MC |
| SRR5126169 | root | "mock,14_days" | 1.68 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.40 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.09 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.68 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.38 | MC |
| SRR1213695 | root | wt | 3.14 | MC |
| SRR4947479 | root | control | 0.91 | MC |
| SRR4947482 | root | Al | 1.24 | MC |
| SRR4947487 | root | control | 0.68 | MC |
| SRR4947490 | root | Al | 0.89 | MC |
| SRR4947494 | root | control | 1.33 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.93 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.34 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.51 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.51 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.45 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.97 | MC |
| SRR6441554 | seedling | wild_type | 0.41 | MC |
| SRR6441555 | seedling | wild_type | 2.54 | MC |
| SRR2154087 | seedling | wt | 1.88 | MC |
| SRR3098741 | seedling | wt | 1.75 | MC |
| SRR3098742 | seedling | wt | 1.77 | MC |
| SRR3098743 | seedling | wt | 0.84 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.84 | MC |
| SRR358791 | seedling | wt | 3.16 | MC |
| SRR358792 | seedling | wt | 2.24 | MC |
| SRR358793 | seedling | wt | 2.15 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.88 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.31 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.97 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.47 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.24 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.42 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.98 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.56 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.20 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.98 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.54 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.01 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.61 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.71 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.43 | MC |