| SRR4457249 | 2nd_leaf | DAH4 | 2.29 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.00 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.90 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.68 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.16 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.08 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.20 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.75 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.52 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.34 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.64 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.25 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.34 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.32 | MC |
| SRR3745126 | anther | wt | 0.80 | MC |
| SRR3745127 | anther | wt | 0.95 | MC |
| SRR358795 | callus | wt | 9.79 | MC |
| SRR358797 | callus | wt | 9.25 | MC |
| SRR5560727 | caryopsis | wild_type | 3.99 | MC |
| SRR5560728 | caryopsis | wild_type | 3.60 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.96 | MC |
| SRR4947495 | root | control | 3.07 | MC |
| SRR7265400 | coleoptile | 2dA | 1.05 | MC |
| SRR7265401 | coleoptile | 2dA | 3.24 | MC |
| SRR7265402 | coleoptile | 2dA | 2.01 | MC |
| SRR7265404 | coleoptile | 2dN | 0.70 | MC |
| SRR7265405 | coleoptile | 2dN | 0.64 | MC |
| SRR7265406 | coleoptile | 3dA | 1.87 | MC |
| SRR7265407 | coleoptile | 3dA | 1.92 | MC |
| SRR7265409 | coleoptile | 3dN | 1.48 | MC |
| SRR7265410 | coleoptile | 3dN | 0.94 | MC |
| SRR7265411 | coleoptile | 3dN | 1.11 | MC |
| SRR7265413 | coleoptile | 4dA | 4.99 | MC |
| SRR7265415 | coleoptile | 4dN | 2.09 | MC |
| SRR7265416 | coleoptile | 4dN | 2.38 | MC |
| SRR7265417 | coleoptile | 4dN | 1.94 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.11 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.03 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.20 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.88 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.42 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.52 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.40 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.73 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.59 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.34 | MC |
| SRR7265376 | embryo | 1hA | 0.48 | MC |
| SRR7265377 | embryo | 1hA | 0.34 | MC |
| SRR7265378 | embryo | 1hA | 0.28 | MC |
| SRR7265379 | embryo | 1hN | 0.37 | MC |
| SRR7265381 | embryo | 1hN | 0.54 | MC |
| SRR7265383 | embryo | 3hA | 0.87 | MC |
| SRR7265384 | embryo | 3hA | 0.60 | MC |
| SRR7265386 | embryo | 3hN | 0.39 | MC |
| SRR7265387 | embryo | 3hN | 0.39 | MC |
| SRR7265388 | embryo | 12hA | 3.84 | MC |
| SRR7265390 | embryo | 12hA | 1.15 | MC |
| SRR7265391 | embryo | 12hN | 1.15 | MC |
| SRR7265392 | embryo | 12hN | 1.15 | MC |
| SRR7265398 | embryo | 24hN | 2.63 | MC |
| SRR2338867 | endosprem | control | 0.76 | MC |
| SRR2338868 | endosprem | high_temperature | 1.43 | MC |
| SRR976168 | flag_leaf | wild_type | 3.19 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.19 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.70 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.53 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.36 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.32 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.29 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.35 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.87 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.69 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.65 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.33 | MC |
| SRR8240825 | leaf | wild_type | 0.87 | MC |
| SRR8240826 | leaf | wild_type | 0.42 | MC |
| SRR8240818 | leaf | wild_type | 0.90 | MC |
| SRR8240819 | leaf | wild_type | 0.86 | MC |
| SRR8240820 | leaf | wild_type | 0.61 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.53 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.08 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.72 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.09 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.39 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.27 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.30 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.57 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.54 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.96 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.64 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.74 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.57 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.37 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.24 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.33 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.80 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.74 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.67 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.10 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.61 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.45 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.91 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.73 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.45 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.91 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.73 | MC |
| SRR1761528 | leaf | drought | 1.45 | MC |
| SRR1761529 | leaf | drought | 0.91 | MC |
| SRR1761530 | leaf | control | 0.73 | MC |
| SRR504365 | leaf | wt | 4.08 | MC |
| SRR6417967 | leaf | H2O_control | 1.15 | MC |
| SRR6417968 | leaf | H2O_control | 2.16 | MC |
| SRR6417969 | leaf | H2O_control | 2.13 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 3.08 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.98 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.96 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.44 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.16 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.32 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.72 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.89 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.06 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.74 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.71 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.35 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.97 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.22 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.57 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.98 | MC |
| SRR1213692 | leaf | wt | 1.11 | MC |
| SRR1213693 | leaf | wt | 2.82 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.45 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.68 | MC |
| SRR6502088 | leaf | control | 2.35 | MC |
| SRR6502089 | leaf | control | 1.56 | MC |
| SRR6502090 | leaf | control | 2.00 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.91 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.68 | MC |
| SRR6502100 | leaf | control | 2.60 | MC |
| SRR6502101 | leaf | control | 2.85 | MC |
| SRR6502102 | leaf | control | 3.63 | MC |
| SRR5856938 | leaf | salt | 1.47 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 3.30 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 5.19 | MC |
| SRR6168974 | leaf | none (control) | 0.85 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.02 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.34 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.55 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.42 | MC |
| SRR8582889 | panicle | AM | 0.14 | MC |
| SRR8582890 | panicle | AM | 0.46 | MC |
| SRR8582891 | panicle | PM | 1.88 | MC |
| SRR8582892 | panicle | PM | 1.07 | MC |
| SRR5110429 | panicle | Dawn | 2.30 | MC |
| SRR5110430 | panicle | Dawn | 0.61 | MC |
| SRR5110431 | panicle | Dawn | 1.56 | MC |
| SRR5110432 | panicle | Dawn | 1.31 | MC |
| SRR4947496 | root | control | 2.85 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.91 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.85 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.70 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.21 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.18 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.49 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.90 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.90 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.85 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.63 | MC |
| SRR5110445 | panicle | Dusk | 1.92 | MC |
| SRR5110447 | panicle | Dusk | 2.17 | MC |
| SRR5110448 | panicle | Dusk | 3.01 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.77 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.75 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.53 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.94 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.49 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.02 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.18 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.52 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.68 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.37 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.91 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.31 | MC |
| SRR5126153 | root | "mock,7_days" | 1.37 | MC |
| SRR5126155 | root | "mock,7_days" | 0.98 | MC |
| SRR5126157 | root | "mock,7_days" | 1.17 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.59 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.51 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.38 | MC |
| SRR5126165 | root | "mock,14_days" | 1.67 | MC |
| SRR5126169 | root | "mock,14_days" | 0.47 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.57 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.98 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.67 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.57 | MC |
| SRR1213695 | root | wt | 2.21 | MC |
| SRR4947478 | root | control | 1.08 | MC |
| SRR4947479 | root | control | 0.97 | MC |
| SRR4947480 | root | control | 3.14 | MC |
| SRR4947481 | root | control | 3.84 | MC |
| SRR4947482 | root | Al | 3.07 | MC |
| SRR4947484 | root | Al | 3.58 | MC |
| SRR4947485 | root | Al | 3.15 | MC |
| SRR4947488 | root | control | 0.78 | MC |
| SRR4947489 | root | control | 1.51 | MC |
| SRR4947490 | root | Al | 2.26 | MC |
| SRR4947491 | root | Al | 4.96 | MC |
| SRR4947492 | root | Al | 1.09 | MC |
| SRR4947494 | root | control | 1.12 | MC |
| SRR4947497 | root | control | 2.28 | MC |
| SRR4947498 | root | Al | 0.87 | MC |
| SRR4947499 | root | Al | 0.94 | MC |
| SRR4947500 | root | Al | 2.12 | MC |
| SRR4947502 | root | control | 0.84 | MC |
| SRR4947503 | root | control | 3.45 | MC |
| SRR4947504 | root | control | 1.86 | MC |
| SRR4947505 | root | control | 1.65 | MC |
| SRR4947506 | root | Al | 1.49 | MC |
| SRR4947507 | root | Al | 1.31 | MC |
| SRR4947508 | root | Al | 0.82 | MC |
| SRR4947509 | root | Al | 3.09 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.68 | MC |
| SRR6502094 | root | control | 4.68 | MC |
| SRR6502095 | root | control | 4.22 | MC |
| SRR6502096 | root | control | 2.98 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.59 | MC |
| SRR6502108 | root | control | 1.99 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.57 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.97 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.23 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.38 | MC |
| SRR2154082 | seedling | wt | 1.35 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.40 | MC |
| SRR1944583 | seedling | no_treatment | 1.35 | MC |
| SRR358791 | seedling | wt | 4.50 | MC |
| SRR358792 | seedling | wt | 5.27 | MC |
| SRR358793 | seedling | wt | 3.65 | MC |
| SRR358794 | seedling | wt | 3.18 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.20 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.04 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.60 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.16 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.46 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.40 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.59 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.54 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.60 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.99 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.84 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.87 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.34 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.89 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.52 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.06 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.96 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.03 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.14 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.14 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.50 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.79 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.40 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.72 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.08 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.56 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.59 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.98 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.87 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.83 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.23 | MC |