| SRR358798 | callus | wt | 0.99 | MC |
| SRR6320473 | carpel | wt | 2.21 | MC |
| SRR5560728 | caryopsis | wild_type | 0.76 | MC |
| SRR5560729 | caryopsis | wild_type | 0.90 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.76 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.70 | MC |
| SRR4947495 | root | control | 2.79 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.48 | MC |
| SRR7265400 | coleoptile | 2dA | 2.68 | MC |
| SRR7265401 | coleoptile | 2dA | 3.11 | MC |
| SRR7265402 | coleoptile | 2dA | 2.25 | MC |
| SRR7265403 | coleoptile | 2dN | 0.65 | MC |
| SRR7265404 | coleoptile | 2dN | 0.86 | MC |
| SRR7265405 | coleoptile | 2dN | 0.71 | MC |
| SRR7265406 | coleoptile | 3dA | 1.12 | MC |
| SRR7265407 | coleoptile | 3dA | 1.80 | MC |
| SRR7265408 | coleoptile | 3dA | 1.00 | MC |
| SRR7265410 | coleoptile | 3dN | 0.36 | MC |
| SRR7265412 | coleoptile | 4dA | 3.12 | MC |
| SRR7265413 | coleoptile | 4dA | 4.05 | MC |
| SRR7265414 | coleoptile | 4dA | 3.44 | MC |
| SRR7265416 | coleoptile | 4dN | 0.61 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 4.14 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.55 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.86 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.03 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.31 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.79 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.51 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.45 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.01 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.87 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.32 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.77 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.19 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.35 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.70 | MC |
| SRR7265390 | embryo | 12hA | 0.55 | MC |
| SRR7265394 | embryo | 24hA | 4.27 | MC |
| SRR7265395 | embryo | 24hA | 2.26 | MC |
| SRR7265396 | embryo | 24hA | 2.38 | MC |
| SRR2338867 | endosprem | control | 0.74 | MC |
| SRR2338868 | endosprem | high_temperature | 0.63 | MC |
| SRR2338869 | endosprem | high_temperature | 0.52 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.55 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.73 | MC |
| SRR1213691 | flower | wt | 0.81 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.59 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.14 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.31 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.99 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.00 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.45 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.57 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.62 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.66 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.30 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.45 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.28 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.66 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.16 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.65 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.63 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.39 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.00 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.40 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.60 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.59 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.54 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.85 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.27 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.36 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.70 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.93 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.51 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.23 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.72 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.32 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.34 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.26 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.35 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.11 | MC |
| SRR1213693 | leaf | wt | 0.37 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.60 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.92 | MC |
| SRR6502088 | leaf | control | 0.49 | MC |
| SRR6502089 | leaf | control | 0.65 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.38 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.48 | MC |
| SRR6502100 | leaf | control | 0.87 | MC |
| SRR6502101 | leaf | control | 0.63 | MC |
| SRR6502102 | leaf | control | 0.56 | MC |
| SRR5856927 | leaf | control | 1.13 | MC |
| SRR5856928 | leaf | control | 1.18 | MC |
| SRR5856929 | leaf | control | 1.07 | MC |
| SRR5856931 | leaf | salt | 0.46 | MC |
| SRR5856932 | leaf | salt | 0.33 | MC |
| SRR5856933 | leaf | control | 1.12 | MC |
| SRR5856934 | leaf | control | 0.70 | MC |
| SRR5856935 | leaf | control | 1.36 | MC |
| SRR5856936 | leaf | salt | 1.04 | MC |
| SRR5856937 | leaf | salt | 0.36 | MC |
| SRR5856938 | leaf | salt | 0.52 | MC |
| SRR6168973 | leaf | none (control) | 0.44 | MC |
| SRR5110429 | panicle | Dawn | 1.51 | MC |
| SRR5110431 | panicle | Dawn | 0.69 | MC |
| SRR5110432 | panicle | Dawn | 2.39 | MC |
| SRR4947496 | root | control | 1.45 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.72 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.88 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.24 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.64 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.04 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.88 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.69 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.45 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.83 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.62 | MC |
| SRR5110446 | panicle | Dusk | 0.88 | MC |
| SRR5110447 | panicle | Dusk | 0.77 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.39 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.84 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.56 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.99 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.61 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.20 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.75 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.80 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.92 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.41 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.38 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.41 | MC |
| SRR5126147 | root | "mock,1_day" | 3.93 | MC |
| SRR5126148 | root | "mock,1_day" | 2.18 | MC |
| SRR5126149 | root | "mock,1_day" | 2.70 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.36 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.00 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.36 | MC |
| SRR5126155 | root | "mock,7_days" | 2.47 | MC |
| SRR5126157 | root | "mock,7_days" | 2.72 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.98 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.08 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.94 | MC |
| SRR5126167 | root | "mock,14_days" | 0.74 | MC |
| SRR5126169 | root | "mock,14_days" | 2.75 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.34 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.86 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.94 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.03 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.76 | MC |
| SRR1213695 | root | wt | 0.30 | MC |
| SRR4947478 | root | control | 1.36 | MC |
| SRR4947479 | root | control | 1.60 | MC |
| SRR4947480 | root | control | 0.69 | MC |
| SRR4947481 | root | control | 2.00 | MC |
| SRR4947485 | root | Al | 1.13 | MC |
| SRR4947487 | root | control | 1.64 | MC |
| SRR4947488 | root | control | 1.23 | MC |
| SRR4947489 | root | control | 0.98 | MC |
| SRR4947490 | root | Al | 0.77 | MC |
| SRR4947491 | root | Al | 1.32 | MC |
| SRR4947492 | root | Al | 1.56 | MC |
| SRR4947493 | root | Al | 1.26 | MC |
| SRR4947494 | root | control | 2.16 | MC |
| SRR4947497 | root | control | 1.08 | MC |
| SRR4947498 | root | Al | 1.13 | MC |
| SRR4947499 | root | Al | 1.75 | MC |
| SRR4947500 | root | Al | 2.29 | MC |
| SRR4947501 | root | Al | 3.72 | MC |
| SRR4947502 | root | control | 2.95 | MC |
| SRR4947503 | root | control | 2.40 | MC |
| SRR4947504 | root | control | 2.02 | MC |
| SRR4947505 | root | control | 2.05 | MC |
| SRR4947506 | root | Al | 0.93 | MC |
| SRR4947507 | root | Al | 1.21 | MC |
| SRR4947508 | root | Al | 1.43 | MC |
| SRR4947509 | root | Al | 0.87 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.58 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.65 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.69 | MC |
| SRR6502094 | root | control | 3.29 | MC |
| SRR6502095 | root | control | 3.95 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.74 | MC |
| SRR6502106 | root | control | 2.53 | MC |
| SRR6502107 | root | control | 3.51 | MC |
| SRR6502108 | root | control | 4.05 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.30 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.89 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.80 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.55 | MC |
| SRR6441554 | seedling | wild_type | 0.31 | MC |
| SRR6441555 | seedling | wild_type | 0.35 | MC |
| SRR2154086 | seedling | wt | 1.02 | MC |
| SRR2154082 | seedling | wt | 1.24 | MC |
| SRR2154083 | seedling | wt | 0.72 | MC |
| SRR2154084 | seedling | wt | 1.83 | MC |
| SRR2154085 | seedling | wt | 0.95 | MC |
| SRR2154087 | seedling | wt | 0.74 | MC |
| SRR3098741 | seedling | wt | 1.34 | MC |
| SRR3098742 | seedling | wt | 0.95 | MC |
| SRR3098743 | seedling | wt | 0.90 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.64 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.58 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.19 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.18 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.33 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.23 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.11 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.60 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.37 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.69 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.18 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.48 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.34 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.48 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.83 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.48 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.04 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.36 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.60 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.69 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.07 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.86 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.89 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.02 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.63 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.53 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.05 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.96 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.71 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.30 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.68 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.21 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.66 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.64 | MC |