| SRR4457251 | 2nd_leaf | DAH4 | 0.36 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.27 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.75 | MC |
| SRR5560727 | caryopsis | wild_type | 0.26 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.46 | MC |
| SRR976168 | flag_leaf | wild_type | 0.40 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.38 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.32 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.21 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.32 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.34 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.46 | MC |
| SRR8060835 | leaf | wild_type | 0.47 | MC |
| SRR8060837 | leaf | wild_type | 0.21 | MC |
| SRR8240824 | leaf | wild_type | 0.38 | MC |
| SRR8240825 | leaf | wild_type | 0.57 | MC |
| SRR8240826 | leaf | wild_type | 0.29 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.39 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.65 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.89 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.97 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.01 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.04 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.20 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.50 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.68 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.69 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.84 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.79 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.89 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.77 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.29 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.67 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.30 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.66 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.68 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.51 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.91 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.16 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.79 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.81 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.45 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.90 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.04 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.83 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.70 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.25 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.79 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.25 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.79 | MC |
| SRR1761528 | leaf | drought | 1.25 | MC |
| SRR1761529 | leaf | drought | 0.79 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.47 | MC |
| SRR6417967 | leaf | H2O_control | 0.51 | MC |
| SRR6417968 | leaf | H2O_control | 0.87 | MC |
| SRR6417969 | leaf | H2O_control | 0.92 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.60 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.65 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.51 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.44 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.60 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.46 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.46 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.21 | MC |
| SRR5856927 | leaf | control | 1.11 | MC |
| SRR5856928 | leaf | control | 0.98 | MC |
| SRR5856929 | leaf | control | 1.04 | MC |
| SRR5856930 | leaf | salt | 0.55 | MC |
| SRR5856931 | leaf | salt | 0.43 | MC |
| SRR5856932 | leaf | salt | 0.24 | MC |
| SRR5856933 | leaf | control | 0.36 | MC |
| SRR5856934 | leaf | control | 0.77 | MC |
| SRR5856935 | leaf | control | 1.05 | MC |
| SRR5856936 | leaf | salt | 0.54 | MC |
| SRR5856937 | leaf | salt | 0.83 | MC |
| SRR5856938 | leaf | salt | 0.32 | MC |
| SRR6168979 | leaf | none (control) | 0.53 | MC |
| SRR6168980 | leaf | none (control) | 0.26 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.27 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.30 | MC |
| SRR8582888 | panicle | AM | 0.65 | MC |
| SRR8582889 | panicle | AM | 0.58 | MC |
| SRR8582890 | panicle | AM | 0.25 | MC |
| SRR5110432 | panicle | Dawn | 0.64 | MC |
| SRR4947496 | root | control | 1.05 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.74 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.50 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.58 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.90 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.50 | MC |
| SRR5110446 | panicle | Dusk | 0.59 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.31 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.69 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.68 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.43 | MC |
| SRR5126147 | root | "mock,1_day" | 0.56 | MC |
| SRR5126148 | root | "mock,1_day" | 0.56 | MC |
| SRR5126149 | root | "mock,1_day" | 0.65 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.87 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.78 | MC |
| SRR5126153 | root | "mock,7_days" | 0.44 | MC |
| SRR5126155 | root | "mock,7_days" | 0.47 | MC |
| SRR5126157 | root | "mock,7_days" | 0.84 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.40 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.67 | MC |
| SRR5126165 | root | "mock,14_days" | 0.63 | MC |
| SRR5126167 | root | "mock,14_days" | 0.58 | MC |
| SRR5126169 | root | "mock,14_days" | 0.59 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.39 | MC |
| SRR4947481 | root | control | 0.74 | MC |
| SRR4947483 | root | Al | 0.62 | MC |
| SRR4947485 | root | Al | 0.70 | MC |
| SRR4947487 | root | control | 0.61 | MC |
| SRR4947491 | root | Al | 0.67 | MC |
| SRR4947499 | root | Al | 0.46 | MC |
| SRR4947500 | root | Al | 0.57 | MC |
| SRR4947503 | root | control | 0.91 | MC |
| SRR4947504 | root | control | 0.68 | MC |
| SRR4947508 | root | Al | 0.67 | MC |
| SRR4947509 | root | Al | 0.50 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.96 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.58 | MC |
| SRR6441554 | seedling | wild_type | 0.35 | MC |
| SRR6441555 | seedling | wild_type | 0.44 | MC |
| SRR2154083 | seedling | wt | 0.46 | MC |
| SRR2154084 | seedling | wt | 0.45 | MC |
| SRR2154085 | seedling | wt | 0.65 | MC |
| SRR2154087 | seedling | wt | 0.93 | MC |
| SRR3098741 | seedling | wt | 0.33 | MC |
| SRR3098742 | seedling | wt | 0.25 | MC |
| SRR3098743 | seedling | wt | 0.33 | MC |
| SRR1944583 | seedling | no_treatment | 0.61 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.41 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.98 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.92 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.57 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.24 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.05 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.23 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.81 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.47 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.47 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.42 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.97 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.63 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.57 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.11 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.78 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.53 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.06 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.71 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.54 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.35 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.41 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.34 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.78 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.38 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.31 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.43 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.37 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.56 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.54 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.44 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.39 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.44 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.60 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.03 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.67 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.60 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.42 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.10 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.97 | MC |