| SRR4457254 | 2nd_leaf | DAH12 | 0.40 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.58 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 4.88 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.58 | MC |
| SRR6320473 | carpel | wt | 4.22 | MC |
| SRR6320498 | carpel | wt | 2.57 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.94 | MC |
| SRR7265400 | coleoptile | 2dA | 1.50 | MC |
| SRR7265401 | coleoptile | 2dA | 1.05 | MC |
| SRR7265403 | coleoptile | 2dN | 3.95 | MC |
| SRR7265405 | coleoptile | 2dN | 2.42 | MC |
| SRR7265406 | coleoptile | 3dA | 2.58 | MC |
| SRR7265407 | coleoptile | 3dA | 1.84 | MC |
| SRR7265408 | coleoptile | 3dA | 2.07 | MC |
| SRR7265415 | coleoptile | 4dN | 1.20 | MC |
| SRR7265417 | coleoptile | 4dN | 2.55 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.22 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.27 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.49 | MC |
| SRR7265388 | embryo | 12hA | 2.85 | MC |
| SRR7265389 | embryo | 12hA | 2.74 | MC |
| SRR7265390 | embryo | 12hA | 1.74 | MC |
| SRR7265392 | embryo | 12hN | 3.84 | MC |
| SRR7265393 | embryo | 12hN | 4.66 | MC |
| SRR7265394 | embryo | 24hA | 4.37 | MC |
| SRR7265395 | embryo | 24hA | 2.20 | MC |
| SRR7265397 | embryo | 24hN | 4.54 | MC |
| SRR7265398 | embryo | 24hN | 3.36 | MC |
| SRR2338866 | endosprem | control | 2.20 | MC |
| SRR2338867 | endosprem | control | 1.60 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.43 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.70 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.31 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.68 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.43 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.33 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.84 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.38 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.64 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.43 | MC |
| SRR8240818 | leaf | wild_type | 0.89 | MC |
| SRR8240820 | leaf | wild_type | 0.43 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.80 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.21 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.81 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.20 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.80 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.24 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.27 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.58 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.03 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.50 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.67 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.82 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.65 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.03 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.81 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.81 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.73 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.95 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.31 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.64 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.64 | MC |
| SRR1761528 | leaf | drought | 4.64 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.65 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.06 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.93 | MC |
| SRR6417967 | leaf | H2O_control | 1.17 | MC |
| SRR6417968 | leaf | H2O_control | 1.47 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.68 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.25 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.82 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.69 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.85 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.29 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.32 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.67 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.88 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.29 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.30 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.98 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.67 | MC |
| SRR6502088 | leaf | control | 0.77 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.45 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.66 | MC |
| SRR5856930 | leaf | salt | 0.29 | MC |
| SRR5856931 | leaf | salt | 0.30 | MC |
| SRR5856932 | leaf | salt | 0.40 | MC |
| SRR5856936 | leaf | salt | 0.12 | MC |
| SRR5856937 | leaf | salt | 0.24 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 4.37 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 5.67 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.94 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 7.45 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 7.40 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.68 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 4.04 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.81 | MC |
| SRR6168975 | leaf | none (control) | 2.45 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.79 | MC |
| SRR6168981 | leaf | none (control) | 1.31 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.45 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.92 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.37 | MC |
| SRR8582888 | panicle | AM | 0.54 | MC |
| SRR8582889 | panicle | AM | 0.36 | MC |
| SRR8582890 | panicle | AM | 0.29 | MC |
| SRR5110429 | panicle | Dawn | 1.17 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.80 | MC |
| SRR5110446 | panicle | Dusk | 0.52 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.18 | MC |
| SRR5110452 | panicle | Dawn + 14h | 4.14 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.00 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.46 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.46 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.33 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.14 | MC |
| SRR1633182 | panicle | WT | 2.57 | MC |
| SRR1633185 | panicle | WT | 3.21 | MC |
| SRR5126147 | root | "mock,1_day" | 2.54 | MC |
| SRR5126153 | root | "mock,7_days" | 0.37 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.40 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.52 | MC |
| SRR5126165 | root | "mock,14_days" | 0.55 | MC |
| SRR5126169 | root | "mock,14_days" | 0.32 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.29 | MC |
| SRR4947485 | root | Al | 0.79 | MC |
| SRR4947498 | root | Al | 5.78 | MC |
| SRR6502094 | root | control | 0.59 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.61 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.59 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.23 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.20 | MC |
| SRR6441554 | seedling | wild_type | 0.33 | MC |
| SRR2154082 | seedling | wt | 1.51 | MC |
| SRR2154087 | seedling | wt | 1.21 | MC |
| SRR3098741 | seedling | wt | 0.54 | MC |
| SRR3098742 | seedling | wt | 0.44 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.60 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.06 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.28 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.54 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.68 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.20 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.95 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.11 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.13 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.51 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.42 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.70 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.79 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.36 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.76 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.14 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.66 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 7.70 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 7.77 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.09 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.85 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 13.36 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 7.40 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 6.59 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 7.02 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.50 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.18 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.11 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.16 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.19 | MC |