| SRR4457251 | 2nd_leaf | DAH4 | 2.85 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.63 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.83 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.57 | MC |
| SRR3745125 | anther | wt | 1.06 | MC |
| SRR3745126 | anther | wt | 0.80 | MC |
| SRR358796 | callus | wt | 3.41 | MC |
| SRR358798 | callus | wt | 1.91 | MC |
| SRR6320498 | carpel | wt | 1.18 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.41 | MC |
| SRR7265402 | coleoptile | 2dA | 2.02 | MC |
| SRR7265404 | coleoptile | 2dN | 2.78 | MC |
| SRR7265409 | coleoptile | 3dN | 3.39 | MC |
| SRR7265411 | coleoptile | 3dN | 2.55 | MC |
| SRR7265412 | coleoptile | 4dA | 2.59 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 4.07 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.49 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.72 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.43 | MC |
| SRR7265380 | embryo | 1hN | 2.81 | MC |
| SRR7265381 | embryo | 1hN | 2.59 | MC |
| SRR7265385 | embryo | 3hN | 4.09 | MC |
| SRR7265390 | embryo | 12hA | 2.39 | MC |
| SRR7265391 | embryo | 12hN | 2.80 | MC |
| SRR7265393 | embryo | 12hN | 3.05 | MC |
| SRR7265394 | embryo | 24hA | 3.58 | MC |
| SRR7265396 | embryo | 24hA | 1.82 | MC |
| SRR7265399 | embryo | 24hN | 4.31 | MC |
| SRR2338868 | endosprem | high_temperature | 0.60 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.83 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.95 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.81 | MC |
| SRR4457248 | flag_leaf | DAH44 | 5.96 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.72 | MC |
| SRR1213691 | flower | wt | 2.62 | MC |
| SRR8060837 | leaf | wild_type | 0.48 | MC |
| SRR8240824 | leaf | wild_type | 1.38 | MC |
| SRR8240825 | leaf | wild_type | 0.81 | MC |
| SRR8240818 | leaf | wild_type | 1.14 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.12 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.48 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.55 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.83 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.05 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.57 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.27 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.09 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.10 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.16 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.17 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.48 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.08 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.45 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.32 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.76 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.61 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.79 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.77 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.01 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.64 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.29 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.53 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.67 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.50 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.50 | MC |
| SRR1761530 | leaf | control | 1.50 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.78 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.59 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.72 | MC |
| SRR6417967 | leaf | H2O_control | 1.91 | MC |
| SRR6417968 | leaf | H2O_control | 1.40 | MC |
| SRR6417969 | leaf | H2O_control | 2.71 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.06 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.94 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.40 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.64 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.51 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.65 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.62 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.23 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.15 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.16 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.84 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.37 | MC |
| SRR1213693 | leaf | wt | 1.20 | MC |
| SRR5856935 | leaf | control | 1.00 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 4.31 | MC |
| SRR6168979 | leaf | none (control) | 1.37 | MC |
| SRR6168980 | leaf | none (control) | 0.96 | MC |
| SRR6168981 | leaf | none (control) | 0.87 | MC |
| SRR8582888 | panicle | AM | 1.72 | MC |
| SRR8582890 | panicle | AM | 1.36 | MC |
| SRR8582893 | panicle | PM | 1.05 | MC |
| SRR5110430 | panicle | Dawn | 1.26 | MC |
| SRR5110431 | panicle | Dawn | 1.04 | MC |
| SRR4947496 | root | control | 2.44 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.09 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.49 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.15 | MC |
| SRR5110448 | panicle | Dusk | 1.36 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.66 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.78 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.79 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.71 | MC |
| SRR1633182 | panicle | WT | 2.99 | MC |
| SRR1633185 | panicle | WT | 3.01 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.05 | MC |
| SRR5126147 | root | "mock,1_day" | 1.34 | MC |
| SRR5126148 | root | "mock,1_day" | 0.84 | MC |
| SRR5126149 | root | "mock,1_day" | 2.99 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.44 | MC |
| SRR5126153 | root | "mock,7_days" | 0.86 | MC |
| SRR5126155 | root | "mock,7_days" | 1.43 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.99 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.03 | MC |
| SRR5126165 | root | "mock,14_days" | 1.05 | MC |
| SRR5126167 | root | "mock,14_days" | 1.40 | MC |
| SRR5126169 | root | "mock,14_days" | 3.18 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.28 | MC |
| SRR4947499 | root | Al | 0.85 | MC |
| SRR4947502 | root | control | 2.00 | MC |
| SRR6502094 | root | control | 4.47 | MC |
| SRR6502095 | root | control | 3.34 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.80 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.52 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.06 | MC |
| SRR2154082 | seedling | wt | 2.12 | MC |
| SRR2154083 | seedling | wt | 2.19 | MC |
| SRR2154087 | seedling | wt | 2.80 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.44 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.22 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.49 | MC |
| SRR1944583 | seedling | no_treatment | 3.85 | MC |
| SRR358792 | seedling | wt | 1.72 | MC |
| SRR358793 | seedling | wt | 1.88 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.89 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.92 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.06 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.89 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.18 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 3.00 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.56 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.03 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.50 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.30 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.34 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.53 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.58 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.36 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.69 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.09 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.70 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 3.74 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.86 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.31 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.00 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.37 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.95 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 6.69 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.82 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.19 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.38 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.01 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.46 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.70 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.24 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.46 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.47 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.79 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.27 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.74 | MC |