| SRR4457249 | 2nd_leaf | DAH4 | 3.24 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.85 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.38 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.43 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.20 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 4.30 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.33 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.11 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.28 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.85 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.25 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.29 | MC |
| SRR6320473 | carpel | wt | 2.42 | MC |
| SRR6320498 | carpel | wt | 6.08 | MC |
| SRR5560727 | caryopsis | wild_type | 3.56 | MC |
| SRR7265400 | coleoptile | 2dA | 3.68 | MC |
| SRR7265404 | coleoptile | 2dN | 0.96 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.96 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.43 | MC |
| SRR7265379 | embryo | 1hN | 2.74 | MC |
| SRR7265387 | embryo | 3hN | 2.76 | MC |
| SRR7265394 | embryo | 24hA | 3.86 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.40 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.04 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.53 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.73 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.19 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.26 | MC |
| SRR8060836 | leaf | wild_type | 1.18 | MC |
| SRR8240824 | leaf | wild_type | 0.78 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.75 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.66 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.05 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.82 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.97 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.50 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.68 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.47 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.20 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.75 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.63 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.33 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.33 | MC |
| SRR1761529 | leaf | drought | 1.33 | MC |
| SRR504365 | leaf | wt | 0.95 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.91 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.45 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.31 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.50 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.60 | MC |
| SRR5856938 | leaf | salt | 0.98 | MC |
| SRR6168974 | leaf | none (control) | 1.81 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 6.25 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.36 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.56 | MC |
| SRR5110429 | panicle | Dawn | 0.57 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.49 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.68 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.89 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 4.99 | MC |
| SRR5110445 | panicle | Dusk | 2.70 | MC |
| SRR5110448 | panicle | Dusk | 2.15 | MC |
| SRR5110449 | panicle | Dawn + 14h | 4.57 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.15 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.34 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.63 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 3.13 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.67 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.52 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.36 | MC |
| SRR5126157 | root | "mock,7_days" | 1.89 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.70 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.81 | MC |
| SRR5126167 | root | "mock,14_days" | 1.34 | MC |
| SRR5126169 | root | "mock,14_days" | 0.88 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.32 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.37 | MC |
| SRR1213695 | root | wt | 0.92 | MC |
| SRR4947479 | root | control | 4.19 | MC |
| SRR4947497 | root | control | 2.06 | MC |
| SRR4947500 | root | Al | 1.46 | MC |
| SRR4947501 | root | Al | 2.78 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.45 | MC |
| SRR6441554 | seedling | wild_type | 1.96 | MC |
| SRR2154082 | seedling | wt | 1.42 | MC |
| SRR2154084 | seedling | wt | 0.76 | MC |
| SRR2154085 | seedling | wt | 0.63 | MC |
| SRR3098741 | seedling | wt | 1.61 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.56 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.46 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.90 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.87 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.04 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.78 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.21 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.66 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.73 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.08 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.76 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.67 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.01 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.45 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.71 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 5.95 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.47 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 5.32 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.63 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 9.06 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 6.00 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 7.48 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.63 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 4.66 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.77 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 4.41 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 8.89 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.94 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.28 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.49 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.20 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.29 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.09 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.00 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.68 | MC |