| SRR5560727 | caryopsis | wild_type | 1.76 | MC |
| SRR5560728 | caryopsis | wild_type | 1.66 | MC |
| SRR5560729 | caryopsis | wild_type | 1.24 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.03 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.54 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.45 | MC |
| SRR7265405 | coleoptile | 2dN | 0.35 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.87 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.41 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.69 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.57 | MC |
| SRR2338868 | endosprem | high_temperature | 0.51 | MC |
| SRR2338869 | endosprem | high_temperature | 0.58 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.53 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.42 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.56 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.22 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.40 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.24 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.29 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.82 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.49 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.00 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.89 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.18 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.87 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.68 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.07 | MC |
| SRR6168973 | leaf | none (control) | 2.58 | MC |
| SRR6168974 | leaf | none (control) | 2.38 | MC |
| SRR6168975 | leaf | none (control) | 3.37 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.82 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.71 | MC |
| SRR6168980 | leaf | none (control) | 0.77 | MC |
| SRR6168981 | leaf | none (control) | 1.71 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.94 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.47 | MC |
| SRR4947496 | root | control | 2.33 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.89 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.62 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.20 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.00 | MC |
| SRR5126147 | root | "mock,1_day" | 1.15 | MC |
| SRR5126148 | root | "mock,1_day" | 1.64 | MC |
| SRR5126149 | root | "mock,1_day" | 1.98 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.99 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.54 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.90 | MC |
| SRR5126153 | root | "mock,7_days" | 0.60 | MC |
| SRR5126155 | root | "mock,7_days" | 1.09 | MC |
| SRR5126157 | root | "mock,7_days" | 1.66 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.38 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.69 | MC |
| SRR5126165 | root | "mock,14_days" | 1.01 | MC |
| SRR5126167 | root | "mock,14_days" | 0.64 | MC |
| SRR5126169 | root | "mock,14_days" | 1.74 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.61 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.43 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.34 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.01 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.48 | MC |
| SRR1213694 | root | wt | 0.26 | MC |
| SRR4947480 | root | control | 2.48 | MC |
| SRR4947481 | root | control | 3.74 | MC |
| SRR4947484 | root | Al | 2.96 | MC |
| SRR4947485 | root | Al | 3.79 | MC |
| SRR4947488 | root | control | 2.94 | MC |
| SRR4947489 | root | control | 3.64 | MC |
| SRR4947492 | root | Al | 2.38 | MC |
| SRR4947493 | root | Al | 2.85 | MC |
| SRR4947497 | root | control | 2.99 | MC |
| SRR4947500 | root | Al | 3.79 | MC |
| SRR4947501 | root | Al | 2.90 | MC |
| SRR4947504 | root | control | 2.69 | MC |
| SRR4947505 | root | control | 3.20 | MC |
| SRR4947508 | root | Al | 2.89 | MC |
| SRR4947509 | root | Al | 3.51 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.54 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.43 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.91 | MC |
| SRR6502094 | root | control | 0.81 | MC |
| SRR6502095 | root | control | 0.75 | MC |
| SRR6502096 | root | control | 0.49 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.60 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.23 | MC |
| SRR6502106 | root | control | 0.59 | MC |
| SRR6502107 | root | control | 0.33 | MC |
| SRR6502108 | root | control | 0.61 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.87 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.29 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.88 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.87 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.50 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.36 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.87 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.35 | MC |
| SRR6441554 | seedling | wild_type | 0.23 | MC |
| SRR6441555 | seedling | wild_type | 0.38 | MC |
| SRR2154085 | seedling | wt | 0.35 | MC |
| SRR3098743 | seedling | wt | 0.30 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.21 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.80 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.01 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.21 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.29 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.02 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.49 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.47 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.05 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.11 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.53 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.30 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.74 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.67 | MC |