| SRR4457249 | 2nd_leaf | DAH4 | 0.72 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.61 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.69 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.39 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.15 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.56 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.99 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.24 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.06 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.52 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.92 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.08 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.37 | MC |
| SRR5560727 | caryopsis | wild_type | 1.44 | MC |
| SRR5560728 | caryopsis | wild_type | 0.55 | MC |
| SRR5560729 | caryopsis | wild_type | 0.39 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.52 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.74 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.89 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.46 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.68 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.48 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.46 | MC |
| SRR7265383 | embryo | 3hA | 0.68 | MC |
| SRR7265387 | embryo | 3hN | 0.36 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.49 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.66 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.16 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.55 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.26 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.64 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.98 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.37 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.57 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.71 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.26 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.93 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.36 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.20 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.85 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.99 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.28 | MC |
| SRR8240824 | leaf | wild_type | 0.30 | MC |
| SRR8240825 | leaf | wild_type | 0.40 | MC |
| SRR8240826 | leaf | wild_type | 0.47 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.45 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.51 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.72 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.59 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.13 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.49 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.24 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.24 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.06 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.08 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.17 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.96 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.40 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.63 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.52 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.40 | MC |
| SRR6417968 | leaf | H2O_control | 1.07 | MC |
| SRR6417969 | leaf | H2O_control | 0.55 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.29 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.97 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.53 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.56 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.66 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.54 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.30 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.56 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.63 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.80 | MC |
| SRR1213692 | leaf | wt | 1.01 | MC |
| SRR1213693 | leaf | wt | 1.39 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.29 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.05 | MC |
| SRR6168973 | leaf | none (control) | 0.56 | MC |
| SRR6168974 | leaf | none (control) | 0.53 | MC |
| SRR6168975 | leaf | none (control) | 0.52 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.22 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.36 | MC |
| SRR8582888 | panicle | AM | 0.83 | MC |
| SRR8582889 | panicle | AM | 0.57 | MC |
| SRR8582890 | panicle | AM | 0.42 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.71 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.93 | MC |
| SRR1633182 | panicle | WT | 3.72 | MC |
| SRR1633185 | panicle | WT | 3.99 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.25 | MC |
| SRR5126147 | root | "mock,1_day" | 0.82 | MC |
| SRR5126148 | root | "mock,1_day" | 0.64 | MC |
| SRR5126149 | root | "mock,1_day" | 0.97 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.70 | MC |
| SRR5126153 | root | "mock,7_days" | 0.56 | MC |
| SRR5126155 | root | "mock,7_days" | 0.71 | MC |
| SRR5126157 | root | "mock,7_days" | 0.57 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.82 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.77 | MC |
| SRR5126167 | root | "mock,14_days" | 0.88 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.46 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.46 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.43 | MC |
| SRR1213694 | root | wt | 2.96 | MC |
| SRR1213695 | root | wt | 1.39 | MC |
| SRR4947481 | root | control | 0.98 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.34 | MC |
| SRR6441555 | seedling | wild_type | 0.35 | MC |
| SRR2154086 | seedling | wt | 0.87 | MC |
| SRR3098741 | seedling | wt | 0.52 | MC |
| SRR3098743 | seedling | wt | 0.23 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.69 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.61 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.46 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.05 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.88 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.25 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.41 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.56 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.44 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.54 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.18 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.84 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.25 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.68 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.92 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.67 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.59 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.48 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.81 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.91 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.44 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.69 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.59 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.71 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.41 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.57 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.47 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.67 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.89 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.87 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.42 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.45 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.46 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.42 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.83 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.36 | MC |