| SRR4457251 | 2nd_leaf | DAH4 | 2.65 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.64 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.85 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.44 | MC |
| SRR3745126 | anther | wt | 4.13 | MC |
| SRR6320473 | carpel | wt | 6.15 | MC |
| SRR5560728 | caryopsis | wild_type | 2.14 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.94 | MC |
| SRR4947495 | root | control | 2.98 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.93 | MC |
| SRR7265400 | coleoptile | 2dA | 0.77 | MC |
| SRR7265401 | coleoptile | 2dA | 2.82 | MC |
| SRR7265402 | coleoptile | 2dA | 1.02 | MC |
| SRR7265403 | coleoptile | 2dN | 0.67 | MC |
| SRR7265404 | coleoptile | 2dN | 0.68 | MC |
| SRR7265405 | coleoptile | 2dN | 0.38 | MC |
| SRR7265406 | coleoptile | 3dA | 0.52 | MC |
| SRR7265407 | coleoptile | 3dA | 2.73 | MC |
| SRR7265408 | coleoptile | 3dA | 1.31 | MC |
| SRR7265412 | coleoptile | 4dA | 1.86 | MC |
| SRR7265413 | coleoptile | 4dA | 1.46 | MC |
| SRR7265414 | coleoptile | 4dA | 0.62 | MC |
| SRR7265416 | coleoptile | 4dN | 3.72 | MC |
| SRR7265417 | coleoptile | 4dN | 0.57 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.93 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.97 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.14 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.91 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.98 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.54 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.92 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.53 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.47 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.47 | MC |
| SRR7265382 | embryo | 3hA | 4.15 | MC |
| SRR7265388 | embryo | 12hA | 2.75 | MC |
| SRR7265389 | embryo | 12hA | 1.43 | MC |
| SRR7265390 | embryo | 12hA | 1.64 | MC |
| SRR7265392 | embryo | 12hN | 0.59 | MC |
| SRR7265394 | embryo | 24hA | 3.38 | MC |
| SRR7265395 | embryo | 24hA | 1.44 | MC |
| SRR7265396 | embryo | 24hA | 1.71 | MC |
| SRR7265397 | embryo | 24hN | 0.53 | MC |
| SRR7265399 | embryo | 24hN | 1.74 | MC |
| SRR2338869 | endosprem | high_temperature | 1.23 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.92 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.56 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.30 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.45 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.20 | MC |
| SRR8240824 | leaf | wild_type | 2.23 | MC |
| SRR8240825 | leaf | wild_type | 1.43 | MC |
| SRR8240826 | leaf | wild_type | 1.64 | MC |
| SRR8240818 | leaf | wild_type | 0.98 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.47 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.58 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.66 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.97 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.92 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.98 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.98 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.09 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.97 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.80 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.32 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.85 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.18 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.23 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.02 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.96 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.45 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.78 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.31 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.58 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 3.88 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.14 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.61 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.61 | MC |
| SRR1761529 | leaf | drought | 1.61 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.46 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.06 | MC |
| SRR6417968 | leaf | H2O_control | 3.25 | MC |
| SRR6417969 | leaf | H2O_control | 0.50 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.29 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.21 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.39 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.80 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.36 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.30 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.15 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.64 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.35 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.30 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.92 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.63 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.20 | MC |
| SRR1213692 | leaf | wt | 4.27 | MC |
| SRR1213693 | leaf | wt | 2.54 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.46 | MC |
| SRR6502089 | leaf | control | 3.64 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.46 | MC |
| SRR6502100 | leaf | control | 0.55 | MC |
| SRR5856928 | leaf | control | 0.73 | MC |
| SRR5856929 | leaf | control | 1.28 | MC |
| SRR5856931 | leaf | salt | 0.20 | MC |
| SRR5856932 | leaf | salt | 0.78 | MC |
| SRR5856933 | leaf | control | 0.49 | MC |
| SRR5856934 | leaf | control | 0.86 | MC |
| SRR5856935 | leaf | control | 1.89 | MC |
| SRR5856936 | leaf | salt | 1.65 | MC |
| SRR5856938 | leaf | salt | 1.53 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 6.63 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 0.96 | MC |
| SRR6168973 | leaf | none (control) | 1.89 | MC |
| SRR6168974 | leaf | none (control) | 2.87 | MC |
| SRR6168975 | leaf | none (control) | 4.08 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 5.69 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 4.22 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.31 | MC |
| SRR8582888 | panicle | AM | 0.45 | MC |
| SRR8582889 | panicle | AM | 1.50 | MC |
| SRR8582890 | panicle | AM | 0.28 | MC |
| SRR8582891 | panicle | PM | 1.14 | MC |
| SRR8582893 | panicle | PM | 4.28 | MC |
| SRR5110430 | panicle | Dawn | 0.83 | MC |
| SRR5110431 | panicle | Dawn | 1.61 | MC |
| SRR4947496 | root | control | 1.74 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.59 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.53 | MC |
| SRR5110446 | panicle | Dusk | 1.36 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.41 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.91 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.25 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.39 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.48 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.99 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 4.08 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.57 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.82 | MC |
| SRR5126147 | root | "mock,1_day" | 1.80 | MC |
| SRR5126148 | root | "mock,1_day" | 1.32 | MC |
| SRR5126149 | root | "mock,1_day" | 3.04 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.48 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.94 | MC |
| SRR5126155 | root | "mock,7_days" | 1.56 | MC |
| SRR5126157 | root | "mock,7_days" | 3.19 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.74 | MC |
| SRR5126165 | root | "mock,14_days" | 3.88 | MC |
| SRR5126169 | root | "mock,14_days" | 3.56 | MC |
| SRR1213694 | root | wt | 0.73 | MC |
| SRR1213695 | root | wt | 1.80 | MC |
| SRR4947479 | root | control | 2.49 | MC |
| SRR4947480 | root | control | 3.78 | MC |
| SRR4947483 | root | Al | 1.12 | MC |
| SRR4947484 | root | Al | 1.76 | MC |
| SRR4947487 | root | control | 1.68 | MC |
| SRR4947489 | root | control | 0.93 | MC |
| SRR4947490 | root | Al | 1.69 | MC |
| SRR4947493 | root | Al | 1.35 | MC |
| SRR4947494 | root | control | 1.55 | MC |
| SRR4947497 | root | control | 1.21 | MC |
| SRR4947500 | root | Al | 1.40 | MC |
| SRR4947501 | root | Al | 1.88 | MC |
| SRR4947502 | root | control | 3.29 | MC |
| SRR4947505 | root | control | 1.44 | MC |
| SRR4947507 | root | Al | 0.84 | MC |
| SRR4947509 | root | Al | 2.29 | MC |
| SRR6502107 | root | control | 0.31 | MC |
| SRR6502108 | root | control | 0.39 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.08 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.22 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.65 | MC |
| SRR6441554 | seedling | wild_type | 0.50 | MC |
| SRR2154086 | seedling | wt | 1.52 | MC |
| SRR2154084 | seedling | wt | 3.09 | MC |
| SRR3098741 | seedling | wt | 2.52 | MC |
| SRR3098742 | seedling | wt | 2.69 | MC |
| SRR3098743 | seedling | wt | 2.45 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.68 | MC |
| SRR1944583 | seedling | no_treatment | 1.14 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.22 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.18 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.99 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.93 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.30 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.43 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.47 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.53 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.03 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.65 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.64 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.02 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.03 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.37 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.55 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 6.35 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.47 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.91 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.53 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.05 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 5.99 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.24 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.78 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 7.22 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.83 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.11 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.43 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.01 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.57 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.48 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.55 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.48 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.62 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.37 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.21 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.50 | MC |