| SRR4457251 | 2nd_leaf | DAH4 | 0.96 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.70 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.34 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.72 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.01 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.51 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.73 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.94 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.25 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.93 | MC |
| SRR3745125 | anther | wt | 2.38 | MC |
| SRR3745126 | anther | wt | 3.56 | MC |
| SRR3745127 | anther | wt | 3.11 | MC |
| SRR5560727 | caryopsis | wild_type | 2.19 | MC |
| SRR5560728 | caryopsis | wild_type | 1.06 | MC |
| SRR5560729 | caryopsis | wild_type | 2.24 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.48 | MC |
| SRR7265403 | coleoptile | 2dN | 1.25 | MC |
| SRR7265404 | coleoptile | 2dN | 2.20 | MC |
| SRR7265405 | coleoptile | 2dN | 1.29 | MC |
| SRR7265406 | coleoptile | 3dA | 0.83 | MC |
| SRR7265409 | coleoptile | 3dN | 1.24 | MC |
| SRR7265410 | coleoptile | 3dN | 0.85 | MC |
| SRR7265411 | coleoptile | 3dN | 0.65 | MC |
| SRR7265416 | coleoptile | 4dN | 0.49 | MC |
| SRR7265417 | coleoptile | 4dN | 0.86 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.31 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.73 | MC |
| SRR7265377 | embryo | 1hA | 0.87 | MC |
| SRR7265379 | embryo | 1hN | 0.36 | MC |
| SRR7265383 | embryo | 3hA | 0.70 | MC |
| SRR7265388 | embryo | 12hA | 0.50 | MC |
| SRR7265391 | embryo | 12hN | 1.18 | MC |
| SRR7265394 | embryo | 24hA | 0.83 | MC |
| SRR7265395 | embryo | 24hA | 0.48 | MC |
| SRR7265397 | embryo | 24hN | 1.42 | MC |
| SRR7265398 | embryo | 24hN | 2.34 | MC |
| SRR7265399 | embryo | 24hN | 1.30 | MC |
| SRR2338866 | endosprem | control | 1.64 | MC |
| SRR2338867 | endosprem | control | 0.49 | MC |
| SRR2338868 | endosprem | high_temperature | 0.51 | MC |
| SRR2338869 | endosprem | high_temperature | 0.78 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.81 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.86 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.53 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.59 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.84 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.68 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.99 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.36 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.91 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.78 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.05 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.19 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.79 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.81 | MC |
| SRR1213691 | flower | wt | 1.31 | MC |
| SRR8060836 | leaf | wild_type | 0.68 | MC |
| SRR8240824 | leaf | wild_type | 0.75 | MC |
| SRR8240819 | leaf | wild_type | 0.89 | MC |
| SRR8240820 | leaf | wild_type | 0.45 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.52 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.63 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.38 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.66 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.58 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.14 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.47 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.18 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.57 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.89 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.73 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.12 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.37 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.12 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.37 | MC |
| SRR1761530 | leaf | control | 1.12 | MC |
| SRR1761531 | leaf | control | 1.37 | MC |
| SRR504365 | leaf | wt | 0.45 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.07 | MC |
| SRR6417968 | leaf | H2O_control | 0.62 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.41 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.46 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.58 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.57 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.27 | MC |
| SRR1213692 | leaf | wt | 0.67 | MC |
| SRR6502090 | leaf | control | 0.53 | MC |
| SRR8582888 | panicle | AM | 1.74 | MC |
| SRR8582889 | panicle | AM | 0.83 | MC |
| SRR8582890 | panicle | AM | 0.57 | MC |
| SRR8582892 | panicle | PM | 1.05 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.40 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.49 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.59 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.20 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.47 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.61 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.57 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.62 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.59 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.63 | MC |
| SRR5126153 | root | "mock,7_days" | 0.40 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.58 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.48 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.86 | MC |
| SRR1213694 | root | wt | 0.39 | MC |
| SRR1213695 | root | wt | 0.41 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.30 | MC |
| SRR2154082 | seedling | wt | 0.37 | MC |
| SRR2154085 | seedling | wt | 0.47 | MC |
| SRR3098741 | seedling | wt | 0.57 | MC |
| SRR3098742 | seedling | wt | 0.23 | MC |
| SRR3098743 | seedling | wt | 0.44 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.30 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.05 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.70 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.31 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.55 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.39 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.68 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.47 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.44 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.76 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.07 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.33 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.55 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.58 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.41 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.54 | MC |