| SRR4457249 | 2nd_leaf | DAH4 | 1.06 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.86 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.12 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 3.40 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 4.57 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.95 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.46 | MC |
| SRR6320473 | carpel | wt | 1.46 | MC |
| SRR6320498 | carpel | wt | 3.05 | MC |
| SRR7265412 | coleoptile | 4dA | 1.17 | MC |
| SRR7265413 | coleoptile | 4dA | 3.46 | MC |
| SRR7265414 | coleoptile | 4dA | 2.52 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.34 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.75 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.84 | MC |
| SRR7265376 | embryo | 1hA | 3.26 | MC |
| SRR7265377 | embryo | 1hA | 2.94 | MC |
| SRR7265380 | embryo | 1hN | 3.71 | MC |
| SRR7265381 | embryo | 1hN | 3.01 | MC |
| SRR7265382 | embryo | 3hA | 4.33 | MC |
| SRR7265383 | embryo | 3hA | 3.38 | MC |
| SRR7265384 | embryo | 3hA | 3.45 | MC |
| SRR7265386 | embryo | 3hN | 2.27 | MC |
| SRR7265387 | embryo | 3hN | 2.59 | MC |
| SRR7265391 | embryo | 12hN | 4.85 | MC |
| SRR7265392 | embryo | 12hN | 1.73 | MC |
| SRR7265393 | embryo | 12hN | 3.11 | MC |
| SRR7265398 | embryo | 24hN | 3.15 | MC |
| SRR7265399 | embryo | 24hN | 3.47 | MC |
| SRR2338866 | endosprem | control | 4.43 | MC |
| SRR2338867 | endosprem | control | 0.62 | MC |
| SRR2338868 | endosprem | high_temperature | 0.62 | MC |
| SRR2338869 | endosprem | high_temperature | 1.03 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.25 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.62 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.99 | MC |
| SRR4457235 | flag_leaf | DAH12 | 3.00 | MC |
| SRR4457236 | flag_leaf | DAH12 | 3.46 | MC |
| SRR1213691 | flower | wt | 2.97 | MC |
| SRR8060835 | leaf | wild_type | 2.25 | MC |
| SRR8060836 | leaf | wild_type | 2.07 | MC |
| SRR8240824 | leaf | wild_type | 0.54 | MC |
| SRR8240825 | leaf | wild_type | 0.33 | MC |
| SRR8240820 | leaf | wild_type | 0.44 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.93 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.56 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.47 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.00 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.85 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.91 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.93 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.59 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.05 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.29 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.80 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.10 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.55 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.81 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.43 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.83 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.89 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.11 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.31 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.70 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.39 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.08 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.40 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.39 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.08 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.40 | MC |
| SRR1761528 | leaf | drought | 4.39 | MC |
| SRR1761530 | leaf | control | 1.08 | MC |
| SRR1761531 | leaf | control | 1.40 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.20 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.73 | MC |
| SRR6417967 | leaf | H2O_control | 1.77 | MC |
| SRR6417968 | leaf | H2O_control | 0.82 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.70 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.59 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.46 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.31 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.33 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.40 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.27 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.25 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.23 | MC |
| SRR1213693 | leaf | wt | 3.19 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.44 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.37 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.94 | MC |
| SRR5856929 | leaf | control | 0.24 | MC |
| SRR5856931 | leaf | salt | 0.15 | MC |
| SRR5856933 | leaf | control | 0.52 | MC |
| SRR5856934 | leaf | control | 0.54 | MC |
| SRR5856935 | leaf | control | 0.29 | MC |
| SRR5856936 | leaf | salt | 0.18 | MC |
| SRR5856937 | leaf | salt | 0.21 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.70 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.39 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.11 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 6.27 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 5.20 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.97 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.39 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.53 | MC |
| SRR6168981 | leaf | none (control) | 1.03 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.91 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.80 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.73 | MC |
| SRR8582888 | panicle | AM | 0.77 | MC |
| SRR8582889 | panicle | AM | 0.23 | MC |
| SRR8582890 | panicle | AM | 1.03 | MC |
| SRR8582891 | panicle | PM | 3.50 | MC |
| SRR8582892 | panicle | PM | 7.32 | MC |
| SRR8582893 | panicle | PM | 2.35 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 4.18 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.69 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.87 | MC |
| SRR5110438 | panicle | Dawn + 7h | 4.15 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.07 | MC |
| SRR5110440 | panicle | Dawn + 7h | 5.09 | MC |
| SRR5110450 | panicle | Dawn + 14h | 4.59 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.27 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.23 | MC |
| SRR1633182 | panicle | WT | 1.24 | MC |
| SRR1633185 | panicle | WT | 1.92 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.48 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.66 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.95 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.89 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.63 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.16 | MC |
| SRR5126147 | root | "mock,1_day" | 0.32 | MC |
| SRR5126148 | root | "mock,1_day" | 0.43 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.47 | MC |
| SRR5126153 | root | "mock,7_days" | 0.68 | MC |
| SRR5126155 | root | "mock,7_days" | 0.59 | MC |
| SRR5126157 | root | "mock,7_days" | 0.63 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.77 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.64 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.43 | MC |
| SRR5126165 | root | "mock,14_days" | 0.51 | MC |
| SRR5126167 | root | "mock,14_days" | 0.49 | MC |
| SRR5126169 | root | "mock,14_days" | 0.33 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.55 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.48 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.58 | MC |
| SRR4947500 | root | Al | 0.73 | MC |
| SRR4947507 | root | Al | 0.55 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.74 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.55 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.39 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.52 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.20 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.28 | MC |
| SRR358791 | seedling | wt | 6.60 | MC |
| SRR358792 | seedling | wt | 2.50 | MC |
| SRR358794 | seedling | wt | 2.96 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.14 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.48 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.38 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.41 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.94 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.13 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.88 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.86 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.52 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.51 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.35 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.07 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.69 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.33 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.23 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.77 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.13 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.62 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.33 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.89 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.74 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.03 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.19 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.99 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.91 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.63 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.32 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 6.30 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.66 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.22 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.54 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.61 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 4.06 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.91 | MC |