| SRR4457249 | 2nd_leaf | DAH4 | 0.65 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.33 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.82 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.68 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.48 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.98 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.97 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.23 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.21 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.93 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.02 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.53 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.18 | MC |
| SRR3745126 | anther | wt | 1.85 | MC |
| SRR3745127 | anther | wt | 2.37 | MC |
| SRR5560727 | caryopsis | wild_type | 3.34 | MC |
| SRR5560728 | caryopsis | wild_type | 3.45 | MC |
| SRR5560729 | caryopsis | wild_type | 3.14 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.41 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.09 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.92 | MC |
| SRR7265400 | coleoptile | 2dA | 0.50 | MC |
| SRR7265401 | coleoptile | 2dA | 0.35 | MC |
| SRR7265403 | coleoptile | 2dN | 0.43 | MC |
| SRR7265405 | coleoptile | 2dN | 0.75 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.05 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.79 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.13 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.97 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.28 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.53 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.74 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.78 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.15 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.19 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.46 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.87 | MC |
| SRR7265378 | embryo | 1hA | 0.36 | MC |
| SRR7265379 | embryo | 1hN | 0.43 | MC |
| SRR7265381 | embryo | 1hN | 0.57 | MC |
| SRR7265384 | embryo | 3hA | 0.36 | MC |
| SRR7265385 | embryo | 3hN | 0.52 | MC |
| SRR7265388 | embryo | 12hA | 0.94 | MC |
| SRR7265389 | embryo | 12hA | 0.73 | MC |
| SRR7265390 | embryo | 12hA | 0.80 | MC |
| SRR7265397 | embryo | 24hN | 0.94 | MC |
| SRR7265398 | embryo | 24hN | 0.52 | MC |
| SRR2338869 | endosprem | high_temperature | 1.11 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.68 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.24 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.34 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.99 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.26 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.45 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.43 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.96 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.67 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.99 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.24 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.11 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.74 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.34 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.27 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.22 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.47 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.12 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.92 | MC |
| SRR1213691 | flower | wt | 1.66 | MC |
| SRR8060835 | leaf | wild_type | 1.11 | MC |
| SRR8060836 | leaf | wild_type | 1.08 | MC |
| SRR8060837 | leaf | wild_type | 0.45 | MC |
| SRR8240824 | leaf | wild_type | 0.31 | MC |
| SRR8240826 | leaf | wild_type | 0.24 | MC |
| SRR8240819 | leaf | wild_type | 0.29 | MC |
| SRR8240820 | leaf | wild_type | 0.35 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.95 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.99 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.92 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.70 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.94 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.86 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.62 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.51 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.66 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.07 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.30 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.48 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.49 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.99 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.70 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.47 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.95 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.14 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.37 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.18 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.45 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.02 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.82 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.59 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.44 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.37 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.57 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.37 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.57 | MC |
| SRR1761529 | leaf | drought | 1.37 | MC |
| SRR1761530 | leaf | control | 2.57 | MC |
| SRR504365 | leaf | wt | 3.87 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.86 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.58 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.16 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.01 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.16 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.63 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.68 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.41 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.13 | MC |
| SRR1213692 | leaf | wt | 4.38 | MC |
| SRR1213693 | leaf | wt | 2.01 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.93 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.09 | MC |
| SRR5856927 | leaf | control | 0.44 | MC |
| SRR5856928 | leaf | control | 0.33 | MC |
| SRR5856929 | leaf | control | 0.16 | MC |
| SRR5856931 | leaf | salt | 0.37 | MC |
| SRR5856936 | leaf | salt | 0.22 | MC |
| SRR5856937 | leaf | salt | 0.31 | MC |
| SRR5856938 | leaf | salt | 0.33 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 2.87 | MC |
| SRR6168973 | leaf | none (control) | 0.76 | MC |
| SRR6168974 | leaf | none (control) | 1.31 | MC |
| SRR6168975 | leaf | none (control) | 2.01 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.65 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.42 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.24 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.32 | MC |
| SRR8582890 | panicle | AM | 0.31 | MC |
| SRR8582892 | panicle | PM | 1.65 | MC |
| SRR8582893 | panicle | PM | 0.77 | MC |
| SRR5110430 | panicle | Dawn | 0.69 | MC |
| SRR5110431 | panicle | Dawn | 0.76 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.64 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.68 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.80 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.59 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.22 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.18 | MC |
| SRR5110445 | panicle | Dusk | 0.66 | MC |
| SRR5110446 | panicle | Dusk | 0.70 | MC |
| SRR5110447 | panicle | Dusk | 0.74 | MC |
| SRR5110448 | panicle | Dusk | 1.05 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.86 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.11 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.42 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.02 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.56 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.50 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.57 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.62 | MC |
| SRR1633182 | panicle | WT | 0.96 | MC |
| SRR1633185 | panicle | WT | 2.64 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.59 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.73 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.62 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.41 | MC |
| SRR5126167 | root | "mock,14_days" | 0.27 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.59 | MC |
| SRR1213695 | root | wt | 2.53 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.24 | MC |
| SRR6441554 | seedling | wild_type | 0.95 | MC |
| SRR6441555 | seedling | wild_type | 0.75 | MC |
| SRR2154086 | seedling | wt | 2.16 | MC |
| SRR2154082 | seedling | wt | 1.96 | MC |
| SRR2154083 | seedling | wt | 1.49 | MC |
| SRR2154084 | seedling | wt | 0.53 | MC |
| SRR2154085 | seedling | wt | 0.84 | MC |
| SRR2154087 | seedling | wt | 1.82 | MC |
| SRR3098741 | seedling | wt | 0.34 | MC |
| SRR3098742 | seedling | wt | 0.28 | MC |
| SRR3098743 | seedling | wt | 0.37 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.10 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.62 | MC |
| SRR1944583 | seedling | no_treatment | 0.86 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.71 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.84 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.28 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.61 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.93 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.30 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.41 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.35 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.27 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.49 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.42 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.31 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.26 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.88 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.01 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.78 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.88 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.81 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.84 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.86 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.74 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.12 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.02 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.31 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.84 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 6.03 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.41 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 7.81 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.16 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 7.82 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.21 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 8.99 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 7.60 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 5.98 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 8.10 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 5.64 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 4.30 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 5.10 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.05 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.98 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.76 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.65 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.03 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.26 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.82 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.12 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.12 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.06 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 5.33 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.24 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.22 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.45 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.97 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.81 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.42 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.68 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.98 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.45 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.92 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.91 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.70 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.72 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.12 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.91 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.18 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.48 | MC |