| SRR4457252 | 2nd_leaf | DAH12 | 0.98 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.76 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.28 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.60 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.53 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.99 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.71 | MC |
| SRR358798 | callus | wt | 1.14 | MC |
| SRR6320498 | carpel | wt | 3.63 | MC |
| SRR5560728 | caryopsis | wild_type | 0.37 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.78 | MC |
| SRR7265400 | coleoptile | 2dA | 0.83 | MC |
| SRR7265401 | coleoptile | 2dA | 0.46 | MC |
| SRR7265402 | coleoptile | 2dA | 0.53 | MC |
| SRR7265403 | coleoptile | 2dN | 0.38 | MC |
| SRR7265404 | coleoptile | 2dN | 0.76 | MC |
| SRR7265405 | coleoptile | 2dN | 0.63 | MC |
| SRR7265409 | coleoptile | 3dN | 0.49 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.94 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.60 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.45 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.44 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.78 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.46 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.88 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.93 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.85 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.56 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.62 | MC |
| SRR7265376 | embryo | 1hA | 1.76 | MC |
| SRR7265377 | embryo | 1hA | 1.77 | MC |
| SRR7265378 | embryo | 1hA | 1.60 | MC |
| SRR7265379 | embryo | 1hN | 1.91 | MC |
| SRR7265380 | embryo | 1hN | 1.51 | MC |
| SRR7265381 | embryo | 1hN | 2.46 | MC |
| SRR7265382 | embryo | 3hA | 0.85 | MC |
| SRR7265383 | embryo | 3hA | 2.43 | MC |
| SRR7265384 | embryo | 3hA | 2.04 | MC |
| SRR7265385 | embryo | 3hN | 1.10 | MC |
| SRR7265386 | embryo | 3hN | 1.27 | MC |
| SRR7265387 | embryo | 3hN | 1.09 | MC |
| SRR7265388 | embryo | 12hA | 1.08 | MC |
| SRR7265389 | embryo | 12hA | 0.82 | MC |
| SRR7265390 | embryo | 12hA | 0.94 | MC |
| SRR7265391 | embryo | 12hN | 0.47 | MC |
| SRR7265392 | embryo | 12hN | 0.65 | MC |
| SRR7265393 | embryo | 12hN | 0.85 | MC |
| SRR7265395 | embryo | 24hA | 0.74 | MC |
| SRR7265397 | embryo | 24hN | 0.91 | MC |
| SRR7265398 | embryo | 24hN | 1.18 | MC |
| SRR7265399 | embryo | 24hN | 0.78 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.46 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.35 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.36 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.68 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.89 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.35 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.60 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.49 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.71 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.93 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.11 | MC |
| SRR8060835 | leaf | wild_type | 1.06 | MC |
| SRR8060836 | leaf | wild_type | 1.29 | MC |
| SRR8060837 | leaf | wild_type | 0.71 | MC |
| SRR8240818 | leaf | wild_type | 0.24 | MC |
| SRR8240820 | leaf | wild_type | 0.28 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.58 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.47 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.49 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.52 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.72 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.35 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.36 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.40 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.40 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.54 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.51 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.54 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.66 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.28 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.52 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.62 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.38 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.45 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.61 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.40 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.51 | MC |
| SRR504365 | leaf | wt | 1.15 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.29 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.31 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.31 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.21 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.61 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.77 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.54 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.29 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.47 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.98 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.59 | MC |
| SRR1213692 | leaf | wt | 1.04 | MC |
| SRR1213693 | leaf | wt | 0.33 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.46 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.97 | MC |
| SRR6502089 | leaf | control | 0.70 | MC |
| SRR6502090 | leaf | control | 0.43 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.46 | MC |
| SRR6502100 | leaf | control | 0.81 | MC |
| SRR6502101 | leaf | control | 0.39 | MC |
| SRR5856930 | leaf | salt | 0.28 | MC |
| SRR5856931 | leaf | salt | 0.17 | MC |
| SRR5856935 | leaf | control | 0.39 | MC |
| SRR5856938 | leaf | salt | 0.18 | MC |
| SRR6168973 | leaf | none (control) | 0.44 | MC |
| SRR6168974 | leaf | none (control) | 0.37 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.65 | MC |
| SRR6168979 | leaf | none (control) | 0.22 | MC |
| SRR8582891 | panicle | PM | 0.64 | MC |
| SRR8582893 | panicle | PM | 0.67 | MC |
| SRR5110431 | panicle | Dawn | 0.93 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.30 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.44 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.86 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.44 | MC |
| SRR5110446 | panicle | Dusk | 0.36 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.87 | MC |
| SRR1633182 | panicle | WT | 0.56 | MC |
| SRR1633185 | panicle | WT | 0.73 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.67 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.61 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.55 | MC |
| SRR1213695 | root | wt | 0.47 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.23 | MC |
| SRR6441555 | seedling | wild_type | 0.45 | MC |
| SRR2154086 | seedling | wt | 0.43 | MC |
| SRR2154082 | seedling | wt | 0.52 | MC |
| SRR2154087 | seedling | wt | 0.41 | MC |
| SRR3098742 | seedling | wt | 0.41 | MC |
| SRR3098743 | seedling | wt | 0.45 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.61 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.90 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.70 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.63 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.02 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 3.89 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.62 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.08 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.72 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.17 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.16 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.80 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.93 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.63 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.42 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.30 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.82 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.43 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.91 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.00 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.98 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.57 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.73 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.67 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.10 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.94 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.87 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.72 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.66 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.24 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.70 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.57 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.96 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.80 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.07 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.71 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.61 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.81 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.64 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.02 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.11 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.50 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.42 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.95 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.90 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.79 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.39 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.68 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.47 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.51 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.60 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.55 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.41 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.49 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.66 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.60 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.24 | MC |