| SRR4457258 | 2nd_leaf | DAH28 | 0.33 | MC |
| SRR6320498 | carpel | wt | 2.42 | MC |
| SRR5560729 | caryopsis | wild_type | 0.40 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.56 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.78 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.56 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.46 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.74 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.81 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.40 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.40 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.19 | MC |
| SRR8060837 | leaf | wild_type | 0.18 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.38 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.58 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.63 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.90 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.04 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.58 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.04 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.03 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.72 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.65 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.49 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.33 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.42 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.62 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.05 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.75 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.61 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.60 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.29 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.38 | MC |
| SRR504365 | leaf | wt | 0.61 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.30 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.79 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.62 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.42 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.32 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.24 | MC |
| SRR1213693 | leaf | wt | 0.31 | MC |
| SRR6502088 | leaf | control | 0.58 | MC |
| SRR6502101 | leaf | control | 0.31 | MC |
| SRR6502102 | leaf | control | 0.49 | MC |
| SRR5856928 | leaf | control | 0.23 | MC |
| SRR5856934 | leaf | control | 0.23 | MC |
| SRR5856935 | leaf | control | 0.29 | MC |
| SRR5856938 | leaf | salt | 0.31 | MC |
| SRR6168973 | leaf | none (control) | 0.36 | MC |
| SRR6168974 | leaf | none (control) | 1.06 | MC |
| SRR6168979 | leaf | none (control) | 0.22 | MC |
| SRR6168980 | leaf | none (control) | 0.38 | MC |
| SRR6168981 | leaf | none (control) | 0.28 | MC |
| SRR8582892 | panicle | PM | 0.73 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.62 | MC |
| SRR5110446 | panicle | Dusk | 0.41 | MC |
| SRR5110447 | panicle | Dusk | 0.44 | MC |
| SRR5110448 | panicle | Dusk | 0.56 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.85 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.74 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.29 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.90 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.19 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.70 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.44 | MC |
| SRR1633182 | panicle | WT | 4.17 | MC |
| SRR1633185 | panicle | WT | 5.90 | MC |
| SRR5126147 | root | "mock,1_day" | 0.51 | MC |
| SRR5126148 | root | "mock,1_day" | 0.34 | MC |
| SRR5126149 | root | "mock,1_day" | 0.45 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.00 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.08 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.18 | MC |
| SRR5126153 | root | "mock,7_days" | 0.64 | MC |
| SRR5126155 | root | "mock,7_days" | 0.42 | MC |
| SRR5126157 | root | "mock,7_days" | 0.71 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.99 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.97 | MC |
| SRR5126165 | root | "mock,14_days" | 0.43 | MC |
| SRR5126167 | root | "mock,14_days" | 0.28 | MC |
| SRR5126169 | root | "mock,14_days" | 0.89 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.06 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.37 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.68 | MC |
| SRR1213695 | root | wt | 0.50 | MC |
| SRR4947482 | root | Al | 0.78 | MC |
| SRR4947484 | root | Al | 0.51 | MC |
| SRR4947487 | root | control | 0.55 | MC |
| SRR4947488 | root | control | 0.58 | MC |
| SRR4947498 | root | Al | 0.52 | MC |
| SRR4947505 | root | control | 0.61 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.70 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.00 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.91 | MC |
| SRR6502096 | root | control | 0.61 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.77 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.93 | MC |
| SRR6502107 | root | control | 0.68 | MC |
| SRR6502108 | root | control | 1.05 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.61 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.40 | MC |
| SRR2154082 | seedling | wt | 0.64 | MC |
| SRR2154083 | seedling | wt | 0.45 | MC |
| SRR2154084 | seedling | wt | 0.35 | MC |
| SRR2154085 | seedling | wt | 0.70 | MC |
| SRR2154087 | seedling | wt | 0.42 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.36 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.82 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.78 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.22 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.70 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.23 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.14 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.59 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.57 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.31 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.21 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.23 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.38 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.86 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.91 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.36 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.44 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.83 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.40 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.75 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.99 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.54 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.32 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.19 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.21 | MC |