| SRR4457250 | 2nd_leaf | DAH4 | 4.22 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 3.53 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.23 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.94 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 3.16 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.92 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.66 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.52 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.16 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.21 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.94 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 4.00 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.64 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.81 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.97 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.76 | MC |
| SRR6320473 | carpel | wt | 4.68 | MC |
| SRR6320498 | carpel | wt | 3.64 | MC |
| SRR5560727 | caryopsis | wild_type | 2.43 | MC |
| SRR5560728 | caryopsis | wild_type | 1.91 | MC |
| SRR5560729 | caryopsis | wild_type | 2.06 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.42 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.10 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.10 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.79 | MC |
| SRR7265400 | coleoptile | 2dA | 2.69 | MC |
| SRR7265401 | coleoptile | 2dA | 3.30 | MC |
| SRR7265402 | coleoptile | 2dA | 3.10 | MC |
| SRR7265403 | coleoptile | 2dN | 2.46 | MC |
| SRR7265404 | coleoptile | 2dN | 1.66 | MC |
| SRR7265405 | coleoptile | 2dN | 2.89 | MC |
| SRR7265406 | coleoptile | 3dA | 2.59 | MC |
| SRR7265407 | coleoptile | 3dA | 2.11 | MC |
| SRR7265408 | coleoptile | 3dA | 1.80 | MC |
| SRR7265409 | coleoptile | 3dN | 1.98 | MC |
| SRR7265410 | coleoptile | 3dN | 1.33 | MC |
| SRR7265411 | coleoptile | 3dN | 1.55 | MC |
| SRR7265415 | coleoptile | 4dN | 1.52 | MC |
| SRR7265416 | coleoptile | 4dN | 1.40 | MC |
| SRR7265417 | coleoptile | 4dN | 2.79 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.46 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.50 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.67 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.64 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.63 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.32 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.39 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.71 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.60 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.62 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.87 | MC |
| SRR7265388 | embryo | 12hA | 4.47 | MC |
| SRR7265389 | embryo | 12hA | 3.49 | MC |
| SRR7265390 | embryo | 12hA | 2.99 | MC |
| SRR7265391 | embryo | 12hN | 3.38 | MC |
| SRR7265392 | embryo | 12hN | 3.15 | MC |
| SRR7265393 | embryo | 12hN | 2.36 | MC |
| SRR7265394 | embryo | 24hA | 5.21 | MC |
| SRR7265395 | embryo | 24hA | 3.25 | MC |
| SRR7265396 | embryo | 24hA | 4.28 | MC |
| SRR7265397 | embryo | 24hN | 0.90 | MC |
| SRR7265398 | embryo | 24hN | 2.35 | MC |
| SRR7265399 | embryo | 24hN | 3.17 | MC |
| SRR2338867 | endosprem | control | 1.01 | MC |
| SRR2338869 | endosprem | high_temperature | 1.92 | MC |
| SRR976168 | flag_leaf | wild_type | 1.20 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.32 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.90 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.30 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.45 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.02 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.71 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.74 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.29 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.91 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.30 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.71 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.17 | MC |
| SRR1213691 | flower | wt | 0.72 | MC |
| SRR8240819 | leaf | wild_type | 2.33 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.57 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.58 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.66 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.72 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.29 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.98 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.83 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.29 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.02 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.49 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.80 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.80 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.07 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.57 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.50 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.21 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 5.01 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.34 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.76 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 5.01 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.34 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.76 | MC |
| SRR1761528 | leaf | drought | 5.01 | MC |
| SRR1761529 | leaf | drought | 5.34 | MC |
| SRR1761531 | leaf | control | 4.76 | MC |
| SRR504365 | leaf | wt | 3.79 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.70 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.28 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.20 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.50 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.36 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.24 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.65 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.01 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.01 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.88 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.11 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.71 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.07 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.42 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.83 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.31 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.08 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.95 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.30 | MC |
| SRR1213692 | leaf | wt | 2.97 | MC |
| SRR1213693 | leaf | wt | 2.09 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.36 | MC |
| SRR5856927 | leaf | control | 0.65 | MC |
| SRR5856928 | leaf | control | 0.23 | MC |
| SRR5856929 | leaf | control | 0.74 | MC |
| SRR5856930 | leaf | salt | 0.24 | MC |
| SRR5856931 | leaf | salt | 0.48 | MC |
| SRR5856932 | leaf | salt | 0.32 | MC |
| SRR5856933 | leaf | control | 0.24 | MC |
| SRR5856934 | leaf | control | 0.34 | MC |
| SRR5856935 | leaf | control | 0.99 | MC |
| SRR5856936 | leaf | salt | 0.60 | MC |
| SRR5856937 | leaf | salt | 0.65 | MC |
| SRR5856938 | leaf | salt | 0.64 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.60 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.63 | MC |
| SRR6168973 | leaf | none (control) | 0.56 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.12 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.35 | MC |
| SRR6168979 | leaf | none (control) | 0.91 | MC |
| SRR6168980 | leaf | none (control) | 0.40 | MC |
| SRR6168981 | leaf | none (control) | 0.80 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.91 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.89 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.94 | MC |
| SRR8582892 | panicle | PM | 3.85 | MC |
| SRR5110429 | panicle | Dawn | 2.77 | MC |
| SRR5110430 | panicle | Dawn | 2.66 | MC |
| SRR5110431 | panicle | Dawn | 2.03 | MC |
| SRR5110432 | panicle | Dawn | 1.79 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.24 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.33 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.22 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.99 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.30 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.22 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.82 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.98 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.50 | MC |
| SRR5110445 | panicle | Dusk | 1.31 | MC |
| SRR5110446 | panicle | Dusk | 1.49 | MC |
| SRR5110447 | panicle | Dusk | 1.77 | MC |
| SRR5110448 | panicle | Dusk | 2.25 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.03 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.95 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.89 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.28 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.28 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.61 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.51 | MC |
| SRR5110457 | panicle | Dawn + 21h | 3.18 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.48 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.79 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.46 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.28 | MC |
| SRR1633185 | panicle | WT | 1.55 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.50 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.53 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.14 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.88 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.91 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.54 | MC |
| SRR5126147 | root | "mock,1_day" | 1.33 | MC |
| SRR5126148 | root | "mock,1_day" | 1.28 | MC |
| SRR5126149 | root | "mock,1_day" | 1.30 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.29 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.72 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.29 | MC |
| SRR5126153 | root | "mock,7_days" | 1.10 | MC |
| SRR5126155 | root | "mock,7_days" | 1.07 | MC |
| SRR5126157 | root | "mock,7_days" | 0.57 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.76 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.42 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.75 | MC |
| SRR5126167 | root | "mock,14_days" | 0.36 | MC |
| SRR5126169 | root | "mock,14_days" | 1.50 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.95 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.55 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.23 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.38 | MC |
| SRR1213694 | root | wt | 0.52 | MC |
| SRR4947482 | root | Al | 0.70 | MC |
| SRR4947483 | root | Al | 0.75 | MC |
| SRR4947490 | root | Al | 0.90 | MC |
| SRR4947491 | root | Al | 0.51 | MC |
| SRR4947493 | root | Al | 1.05 | MC |
| SRR4947501 | root | Al | 0.49 | MC |
| SRR4947508 | root | Al | 0.57 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.87 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.26 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.84 | MC |
| SRR6502095 | root | control | 1.28 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.75 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.71 | MC |
| SRR6502106 | root | control | 0.78 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.61 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.27 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.54 | MC |
| SRR6441554 | seedling | wild_type | 1.13 | MC |
| SRR6441555 | seedling | wild_type | 2.27 | MC |
| SRR2154085 | seedling | wt | 2.88 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.43 | MC |
| SRR1944583 | seedling | no_treatment | 2.74 | MC |
| SRR358791 | seedling | wt | 5.78 | MC |
| SRR358792 | seedling | wt | 1.92 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.49 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.55 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.58 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.84 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.39 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.00 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.30 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.66 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.60 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.34 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.36 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.54 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.24 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.07 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.88 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.02 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.86 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.30 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.56 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.85 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.94 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.96 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.39 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.94 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.90 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.33 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.25 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.68 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.71 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.29 | MC |