| SRR358795 | callus | wt | 3.02 | MC |
| SRR358796 | callus | wt | 2.38 | MC |
| SRR358797 | callus | wt | 2.69 | MC |
| SRR358798 | callus | wt | 2.29 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.32 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.98 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.66 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.32 | MC |
| SRR7265403 | coleoptile | 2dN | 3.94 | MC |
| SRR7265404 | coleoptile | 2dN | 2.92 | MC |
| SRR7265405 | coleoptile | 2dN | 3.06 | MC |
| SRR7265409 | coleoptile | 3dN | 2.78 | MC |
| SRR7265410 | coleoptile | 3dN | 2.63 | MC |
| SRR7265411 | coleoptile | 3dN | 2.12 | MC |
| SRR7265413 | coleoptile | 4dA | 0.73 | MC |
| SRR7265415 | coleoptile | 4dN | 2.72 | MC |
| SRR7265416 | coleoptile | 4dN | 1.94 | MC |
| SRR7265417 | coleoptile | 4dN | 3.13 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.88 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.33 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.14 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.60 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.41 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.39 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.47 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.29 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.79 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.81 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.34 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.67 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.52 | MC |
| SRR7265388 | embryo | 12hA | 2.42 | MC |
| SRR7265389 | embryo | 12hA | 2.68 | MC |
| SRR7265390 | embryo | 12hA | 3.61 | MC |
| SRR7265391 | embryo | 12hN | 1.40 | MC |
| SRR7265392 | embryo | 12hN | 1.91 | MC |
| SRR7265393 | embryo | 12hN | 1.85 | MC |
| SRR7265395 | embryo | 24hA | 4.11 | MC |
| SRR7265396 | embryo | 24hA | 4.53 | MC |
| SRR7265397 | embryo | 24hN | 2.97 | MC |
| SRR7265398 | embryo | 24hN | 2.69 | MC |
| SRR7265399 | embryo | 24hN | 3.80 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.38 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.50 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.34 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.46 | MC |
| SRR5856933 | leaf | control | 0.21 | MC |
| SRR5856935 | leaf | control | 0.27 | MC |
| SRR5856937 | leaf | salt | 0.38 | MC |
| SRR4947496 | root | control | 1.23 | MC |
| SRR1633182 | panicle | WT | 1.52 | MC |
| SRR1633185 | panicle | WT | 0.78 | MC |
| SRR5126147 | root | "mock,1_day" | 1.05 | MC |
| SRR5126148 | root | "mock,1_day" | 1.16 | MC |
| SRR5126149 | root | "mock,1_day" | 1.44 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.37 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.74 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.97 | MC |
| SRR5126153 | root | "mock,7_days" | 2.09 | MC |
| SRR5126155 | root | "mock,7_days" | 0.94 | MC |
| SRR5126157 | root | "mock,7_days" | 1.00 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.93 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.73 | MC |
| SRR5126165 | root | "mock,14_days" | 2.45 | MC |
| SRR5126167 | root | "mock,14_days" | 0.52 | MC |
| SRR5126169 | root | "mock,14_days" | 2.35 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.85 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.93 | MC |
| SRR4947480 | root | control | 0.72 | MC |
| SRR4947482 | root | Al | 1.36 | MC |
| SRR4947484 | root | Al | 0.56 | MC |
| SRR4947485 | root | Al | 1.79 | MC |
| SRR4947488 | root | control | 0.55 | MC |
| SRR4947493 | root | Al | 0.57 | MC |
| SRR4947494 | root | control | 1.40 | MC |
| SRR4947497 | root | control | 0.70 | MC |
| SRR4947503 | root | control | 0.58 | MC |
| SRR4947506 | root | Al | 1.58 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.04 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.05 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.81 | MC |
| SRR6502094 | root | control | 1.38 | MC |
| SRR6502095 | root | control | 0.61 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.71 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.38 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.70 | MC |
| SRR6502106 | root | control | 0.74 | MC |
| SRR6502107 | root | control | 1.51 | MC |
| SRR6502108 | root | control | 2.24 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.71 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.50 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.93 | MC |
| SRR6441554 | seedling | wild_type | 0.22 | MC |
| SRR6441555 | seedling | wild_type | 0.41 | MC |
| SRR2154086 | seedling | wt | 0.64 | MC |
| SRR2154082 | seedling | wt | 0.70 | MC |
| SRR2154083 | seedling | wt | 0.28 | MC |
| SRR2154084 | seedling | wt | 0.49 | MC |
| SRR2154085 | seedling | wt | 0.85 | MC |
| SRR3098742 | seedling | wt | 0.21 | MC |
| SRR3098743 | seedling | wt | 0.28 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.83 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.36 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.37 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.42 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.33 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.31 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.56 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.63 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.64 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.03 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.75 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.90 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.31 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.01 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.56 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.79 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.71 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.71 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.48 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.02 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.30 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.31 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.15 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.66 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.34 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.63 | MC |