| SRR4457249 | 2nd_leaf | DAH4 | 0.60 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.42 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.18 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.45 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.69 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.60 | MC |
| SRR5560727 | caryopsis | wild_type | 2.68 | MC |
| SRR5560728 | caryopsis | wild_type | 2.84 | MC |
| SRR7265401 | coleoptile | 2dA | 1.60 | MC |
| SRR7265402 | coleoptile | 2dA | 0.83 | MC |
| SRR7265403 | coleoptile | 2dN | 2.02 | MC |
| SRR7265404 | coleoptile | 2dN | 1.32 | MC |
| SRR7265406 | coleoptile | 3dA | 0.89 | MC |
| SRR7265407 | coleoptile | 3dA | 2.82 | MC |
| SRR7265408 | coleoptile | 3dA | 1.19 | MC |
| SRR7265410 | coleoptile | 3dN | 2.23 | MC |
| SRR7265411 | coleoptile | 3dN | 2.18 | MC |
| SRR7265412 | coleoptile | 4dA | 1.90 | MC |
| SRR7265413 | coleoptile | 4dA | 1.36 | MC |
| SRR7265415 | coleoptile | 4dN | 1.26 | MC |
| SRR7265416 | coleoptile | 4dN | 3.71 | MC |
| SRR7265417 | coleoptile | 4dN | 3.09 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.44 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.83 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.81 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.74 | MC |
| SRR7265381 | embryo | 1hN | 2.59 | MC |
| SRR7265382 | embryo | 3hA | 4.32 | MC |
| SRR7265383 | embryo | 3hA | 3.41 | MC |
| SRR7265384 | embryo | 3hA | 3.82 | MC |
| SRR7265388 | embryo | 12hA | 1.49 | MC |
| SRR7265389 | embryo | 12hA | 2.78 | MC |
| SRR7265390 | embryo | 12hA | 3.32 | MC |
| SRR7265391 | embryo | 12hN | 4.90 | MC |
| SRR7265392 | embryo | 12hN | 3.86 | MC |
| SRR7265393 | embryo | 12hN | 4.66 | MC |
| SRR7265396 | embryo | 24hA | 1.21 | MC |
| SRR7265397 | embryo | 24hN | 2.02 | MC |
| SRR7265398 | embryo | 24hN | 3.17 | MC |
| SRR7265399 | embryo | 24hN | 1.36 | MC |
| SRR2338869 | endosprem | high_temperature | 0.69 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.55 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.18 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.79 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.65 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.45 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.42 | MC |
| SRR8240820 | leaf | wild_type | 1.14 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.70 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.04 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.64 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.66 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.76 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.50 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.23 | MC |
| SRR504365 | leaf | wt | 1.89 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.24 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.68 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.36 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.70 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.59 | MC |
| SRR1213693 | leaf | wt | 1.30 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.58 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.04 | MC |
| SRR6502090 | leaf | control | 0.60 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.33 | MC |
| SRR6168975 | leaf | none (control) | 2.47 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.94 | MC |
| SRR8582888 | panicle | AM | 2.72 | MC |
| SRR8582889 | panicle | AM | 1.33 | MC |
| SRR8582893 | panicle | PM | 3.37 | MC |
| SRR4947496 | root | control | 3.55 | MC |
| SRR5110452 | panicle | Dawn + 14h | 4.81 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.56 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.78 | MC |
| SRR5126153 | root | "mock,7_days" | 1.31 | MC |
| SRR5126157 | root | "mock,7_days" | 3.63 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.73 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.23 | MC |
| SRR1213695 | root | wt | 1.55 | MC |
| SRR4947481 | root | control | 4.99 | MC |
| SRR4947488 | root | control | 3.30 | MC |
| SRR4947499 | root | Al | 0.47 | MC |
| SRR4947500 | root | Al | 3.31 | MC |
| SRR4947501 | root | Al | 5.87 | MC |
| SRR4947504 | root | control | 1.52 | MC |
| SRR4947509 | root | Al | 2.79 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.55 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.34 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.87 | MC |
| SRR2154086 | seedling | wt | 3.15 | MC |
| SRR2154084 | seedling | wt | 1.92 | MC |
| SRR2154087 | seedling | wt | 0.81 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.86 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.43 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.73 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.69 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.57 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.66 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.89 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.14 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.30 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.57 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.47 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 3.17 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.62 | MC |