| SRR6320473 | carpel | wt | 2.82 | MC |
| SRR6320498 | carpel | wt | 3.37 | MC |
| SRR5560727 | caryopsis | wild_type | 0.66 | MC |
| SRR5560728 | caryopsis | wild_type | 4.82 | MC |
| SRR5560729 | caryopsis | wild_type | 1.24 | MC |
| SRR4947495 | root | control | 0.66 | MC |
| SRR7265400 | coleoptile | 2dA | 1.46 | MC |
| SRR7265401 | coleoptile | 2dA | 1.50 | MC |
| SRR7265402 | coleoptile | 2dA | 2.01 | MC |
| SRR7265404 | coleoptile | 2dN | 0.47 | MC |
| SRR7265411 | coleoptile | 3dN | 0.34 | MC |
| SRR7265414 | coleoptile | 4dA | 3.79 | MC |
| SRR7265415 | coleoptile | 4dN | 0.73 | MC |
| SRR7265416 | coleoptile | 4dN | 1.29 | MC |
| SRR7265417 | coleoptile | 4dN | 0.78 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.39 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.37 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.96 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 4.10 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.16 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.48 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.06 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.06 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.96 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.94 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.30 | MC |
| SRR7265376 | embryo | 1hA | 0.94 | MC |
| SRR7265377 | embryo | 1hA | 0.72 | MC |
| SRR7265378 | embryo | 1hA | 0.50 | MC |
| SRR7265379 | embryo | 1hN | 0.41 | MC |
| SRR7265381 | embryo | 1hN | 0.23 | MC |
| SRR7265384 | embryo | 3hA | 0.55 | MC |
| SRR7265385 | embryo | 3hN | 0.74 | MC |
| SRR7265387 | embryo | 3hN | 0.52 | MC |
| SRR7265388 | embryo | 12hA | 2.00 | MC |
| SRR7265389 | embryo | 12hA | 1.77 | MC |
| SRR7265390 | embryo | 12hA | 2.34 | MC |
| SRR7265394 | embryo | 24hA | 4.02 | MC |
| SRR7265395 | embryo | 24hA | 1.63 | MC |
| SRR7265396 | embryo | 24hA | 2.27 | MC |
| SRR976168 | flag_leaf | wild_type | 1.09 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.45 | MC |
| SRR8060835 | leaf | wild_type | 0.50 | MC |
| SRR8060836 | leaf | wild_type | 0.89 | MC |
| SRR8060837 | leaf | wild_type | 0.55 | MC |
| SRR8240825 | leaf | wild_type | 1.32 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.78 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.71 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.59 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.98 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.45 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.13 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.35 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.03 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.87 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.93 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.49 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.94 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.94 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.63 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.52 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.86 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.38 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.73 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.92 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.63 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.23 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.14 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.63 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.59 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.50 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.09 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.35 | MC |
| SRR504365 | leaf | wt | 0.52 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.54 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.54 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.54 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.44 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.83 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.98 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.85 | MC |
| SRR1213693 | leaf | wt | 0.30 | MC |
| SRR6502088 | leaf | control | 2.00 | MC |
| SRR6502089 | leaf | control | 1.29 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.68 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.81 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.60 | MC |
| SRR6502100 | leaf | control | 1.34 | MC |
| SRR6502101 | leaf | control | 0.74 | MC |
| SRR6502102 | leaf | control | 0.86 | MC |
| SRR5856927 | leaf | control | 1.13 | MC |
| SRR5856928 | leaf | control | 1.77 | MC |
| SRR5856929 | leaf | control | 1.40 | MC |
| SRR5856933 | leaf | control | 2.44 | MC |
| SRR5856934 | leaf | control | 1.80 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.60 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.45 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.77 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 0.89 | MC |
| SRR6168973 | leaf | none (control) | 0.75 | MC |
| SRR6168974 | leaf | none (control) | 1.06 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.36 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.31 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.74 | MC |
| SRR6168979 | leaf | none (control) | 0.36 | MC |
| SRR6168980 | leaf | none (control) | 0.19 | MC |
| SRR6168981 | leaf | none (control) | 0.47 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.60 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.37 | MC |
| SRR8582890 | panicle | AM | 0.65 | MC |
| SRR5110429 | panicle | Dawn | 2.12 | MC |
| SRR5110430 | panicle | Dawn | 3.52 | MC |
| SRR5110431 | panicle | Dawn | 2.26 | MC |
| SRR5110432 | panicle | Dawn | 1.22 | MC |
| SRR4947496 | root | control | 0.91 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.97 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.91 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.59 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.34 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.72 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.50 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.06 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.42 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.79 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.74 | MC |
| SRR5110445 | panicle | Dusk | 2.84 | MC |
| SRR5110446 | panicle | Dusk | 2.25 | MC |
| SRR5110447 | panicle | Dusk | 2.26 | MC |
| SRR5110448 | panicle | Dusk | 1.71 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.78 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.66 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.99 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.42 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.98 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.41 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.89 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.60 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.92 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.06 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.94 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.49 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.65 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.10 | MC |
| SRR5126153 | root | "mock,7_days" | 4.08 | MC |
| SRR5126157 | root | "mock,7_days" | 3.87 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.77 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.67 | MC |
| SRR1213694 | root | wt | 1.96 | MC |
| SRR1213695 | root | wt | 0.42 | MC |
| SRR4947478 | root | control | 0.62 | MC |
| SRR4947479 | root | control | 0.61 | MC |
| SRR4947480 | root | control | 0.81 | MC |
| SRR4947481 | root | control | 1.16 | MC |
| SRR4947482 | root | Al | 1.71 | MC |
| SRR4947483 | root | Al | 0.78 | MC |
| SRR4947484 | root | Al | 0.70 | MC |
| SRR4947485 | root | Al | 1.14 | MC |
| SRR4947488 | root | control | 0.87 | MC |
| SRR4947489 | root | control | 1.13 | MC |
| SRR4947490 | root | Al | 1.64 | MC |
| SRR4947491 | root | Al | 0.67 | MC |
| SRR4947492 | root | Al | 1.06 | MC |
| SRR4947493 | root | Al | 1.52 | MC |
| SRR4947494 | root | control | 0.92 | MC |
| SRR4947497 | root | control | 1.59 | MC |
| SRR4947498 | root | Al | 0.57 | MC |
| SRR4947499 | root | Al | 1.06 | MC |
| SRR4947501 | root | Al | 0.91 | MC |
| SRR4947503 | root | control | 0.83 | MC |
| SRR4947504 | root | control | 0.66 | MC |
| SRR4947505 | root | control | 0.88 | MC |
| SRR4947506 | root | Al | 0.99 | MC |
| SRR4947507 | root | Al | 0.81 | MC |
| SRR4947508 | root | Al | 1.32 | MC |
| SRR4947509 | root | Al | 1.80 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.48 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.66 | MC |
| SRR6502094 | root | control | 0.83 | MC |
| SRR6502095 | root | control | 1.58 | MC |
| SRR6502096 | root | control | 1.33 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.24 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.50 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.88 | MC |
| SRR6502106 | root | control | 0.90 | MC |
| SRR6502107 | root | control | 1.05 | MC |
| SRR6502108 | root | control | 2.48 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.11 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.45 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.43 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.27 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.47 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.67 | MC |
| SRR3098741 | seedling | wt | 2.43 | MC |
| SRR3098742 | seedling | wt | 1.34 | MC |
| SRR3098743 | seedling | wt | 2.60 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.70 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.94 | MC |
| SRR1944583 | seedling | no_treatment | 1.19 | MC |
| SRR358791 | seedling | wt | 3.52 | MC |
| SRR358793 | seedling | wt | 3.04 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.11 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.36 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.58 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.93 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.69 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.96 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.87 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.23 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 3.05 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.81 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.09 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.45 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.82 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.35 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.02 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.19 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.93 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.10 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.29 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.61 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.40 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.81 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.48 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.24 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.71 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.33 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.60 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 4.96 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.47 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.34 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.69 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.43 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.24 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.83 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.47 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.50 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.89 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.57 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.13 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.08 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.34 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.28 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.18 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.54 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.30 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.49 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 4.80 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.60 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.50 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 6.99 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.23 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.90 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.24 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 4.39 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.20 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.27 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.72 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.03 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.50 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.23 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.62 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.70 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.15 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.39 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.87 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.31 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 3.11 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.47 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.90 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.12 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 3.02 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.11 | MC |