| SRR4457250 | 2nd_leaf | DAH4 | 0.41 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.78 | MC |
| SRR358795 | callus | wt | 3.68 | MC |
| SRR358797 | callus | wt | 5.61 | MC |
| SRR358798 | callus | wt | 7.12 | MC |
| SRR5560727 | caryopsis | wild_type | 1.55 | MC |
| SRR5560728 | caryopsis | wild_type | 0.87 | MC |
| SRR5560729 | caryopsis | wild_type | 0.86 | MC |
| SRR4947495 | root | control | 3.59 | MC |
| SRR7265400 | coleoptile | 2dA | 2.09 | MC |
| SRR7265401 | coleoptile | 2dA | 2.27 | MC |
| SRR7265402 | coleoptile | 2dA | 1.64 | MC |
| SRR7265403 | coleoptile | 2dN | 0.76 | MC |
| SRR7265404 | coleoptile | 2dN | 2.10 | MC |
| SRR7265405 | coleoptile | 2dN | 0.97 | MC |
| SRR7265409 | coleoptile | 3dN | 1.87 | MC |
| SRR7265410 | coleoptile | 3dN | 0.92 | MC |
| SRR7265411 | coleoptile | 3dN | 1.38 | MC |
| SRR7265415 | coleoptile | 4dN | 1.39 | MC |
| SRR7265416 | coleoptile | 4dN | 0.76 | MC |
| SRR7265417 | coleoptile | 4dN | 1.64 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.94 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.21 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.64 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.09 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.49 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.87 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.96 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.78 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.39 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.99 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.01 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.72 | MC |
| SRR7265376 | embryo | 1hA | 0.47 | MC |
| SRR7265377 | embryo | 1hA | 0.55 | MC |
| SRR7265378 | embryo | 1hA | 0.62 | MC |
| SRR7265379 | embryo | 1hN | 1.14 | MC |
| SRR7265380 | embryo | 1hN | 0.53 | MC |
| SRR7265381 | embryo | 1hN | 0.74 | MC |
| SRR7265388 | embryo | 12hA | 1.07 | MC |
| SRR7265389 | embryo | 12hA | 2.01 | MC |
| SRR7265390 | embryo | 12hA | 0.89 | MC |
| SRR7265392 | embryo | 12hN | 0.85 | MC |
| SRR7265393 | embryo | 12hN | 0.57 | MC |
| SRR7265394 | embryo | 24hA | 1.16 | MC |
| SRR7265395 | embryo | 24hA | 1.82 | MC |
| SRR7265397 | embryo | 24hN | 1.77 | MC |
| SRR7265399 | embryo | 24hN | 0.75 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.23 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.36 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.33 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.33 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.65 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.49 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.21 | MC |
| SRR1213691 | flower | wt | 0.95 | MC |
| SRR8060836 | leaf | wild_type | 0.35 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.85 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.45 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.33 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.11 | MC |
| SRR504365 | leaf | wt | 0.59 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.77 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.27 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.54 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.45 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.60 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.45 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.42 | MC |
| SRR1213692 | leaf | wt | 1.41 | MC |
| SRR1213693 | leaf | wt | 1.25 | MC |
| SRR6502100 | leaf | control | 0.43 | MC |
| SRR5856927 | leaf | control | 0.40 | MC |
| SRR5856929 | leaf | control | 0.30 | MC |
| SRR5856931 | leaf | salt | 0.25 | MC |
| SRR5856933 | leaf | control | 0.56 | MC |
| SRR5856934 | leaf | control | 0.39 | MC |
| SRR5856935 | leaf | control | 0.75 | MC |
| SRR5856936 | leaf | salt | 0.24 | MC |
| SRR5856938 | leaf | salt | 0.37 | MC |
| SRR6168973 | leaf | none (control) | 1.00 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.85 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.37 | MC |
| SRR6168981 | leaf | none (control) | 0.32 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.29 | MC |
| SRR5110429 | panicle | Dawn | 0.87 | MC |
| SRR5110431 | panicle | Dawn | 1.23 | MC |
| SRR4947496 | root | control | 3.51 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.22 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.86 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.34 | MC |
| SRR5110445 | panicle | Dusk | 0.46 | MC |
| SRR5110446 | panicle | Dusk | 1.81 | MC |
| SRR5110447 | panicle | Dusk | 0.98 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.30 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.92 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.50 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.66 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.38 | MC |
| SRR1633182 | panicle | WT | 4.49 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.78 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.54 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.21 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.84 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.20 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.27 | MC |
| SRR5126147 | root | "mock,1_day" | 2.19 | MC |
| SRR5126148 | root | "mock,1_day" | 0.91 | MC |
| SRR5126149 | root | "mock,1_day" | 1.33 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.72 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.10 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 4.08 | MC |
| SRR5126153 | root | "mock,7_days" | 3.07 | MC |
| SRR5126155 | root | "mock,7_days" | 1.66 | MC |
| SRR5126157 | root | "mock,7_days" | 3.16 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.72 | MC |
| SRR5126167 | root | "mock,14_days" | 0.76 | MC |
| SRR5126169 | root | "mock,14_days" | 2.65 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.61 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.59 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.72 | MC |
| SRR1213695 | root | wt | 1.62 | MC |
| SRR4947478 | root | control | 2.16 | MC |
| SRR4947479 | root | control | 1.04 | MC |
| SRR4947480 | root | control | 1.99 | MC |
| SRR4947481 | root | control | 3.69 | MC |
| SRR4947482 | root | Al | 2.06 | MC |
| SRR4947483 | root | Al | 2.06 | MC |
| SRR4947484 | root | Al | 2.27 | MC |
| SRR4947485 | root | Al | 2.37 | MC |
| SRR4947487 | root | control | 1.32 | MC |
| SRR4947488 | root | control | 1.38 | MC |
| SRR4947489 | root | control | 1.28 | MC |
| SRR4947490 | root | Al | 1.26 | MC |
| SRR4947491 | root | Al | 3.85 | MC |
| SRR4947493 | root | Al | 2.64 | MC |
| SRR4947497 | root | control | 2.19 | MC |
| SRR4947498 | root | Al | 2.02 | MC |
| SRR4947499 | root | Al | 2.76 | MC |
| SRR4947500 | root | Al | 1.81 | MC |
| SRR4947503 | root | control | 2.63 | MC |
| SRR4947504 | root | control | 2.39 | MC |
| SRR4947505 | root | control | 4.43 | MC |
| SRR4947506 | root | Al | 1.02 | MC |
| SRR4947507 | root | Al | 3.31 | MC |
| SRR4947508 | root | Al | 1.77 | MC |
| SRR4947509 | root | Al | 5.15 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.05 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.10 | MC |
| SRR6502094 | root | control | 0.92 | MC |
| SRR6502095 | root | control | 1.53 | MC |
| SRR6502096 | root | control | 1.55 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.20 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.80 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.98 | MC |
| SRR6502106 | root | control | 2.61 | MC |
| SRR6502107 | root | control | 2.11 | MC |
| SRR6502108 | root | control | 2.02 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.63 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.73 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.93 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.18 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.04 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.65 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.36 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.65 | MC |
| SRR6441555 | seedling | wild_type | 0.31 | MC |
| SRR2154086 | seedling | wt | 0.79 | MC |
| SRR2154083 | seedling | wt | 0.91 | MC |
| SRR2154084 | seedling | wt | 0.95 | MC |
| SRR2154085 | seedling | wt | 0.77 | MC |
| SRR2154087 | seedling | wt | 0.69 | MC |
| SRR3098742 | seedling | wt | 0.25 | MC |
| SRR3098743 | seedling | wt | 0.16 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.12 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.50 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.70 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.30 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.62 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.29 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.43 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.93 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.44 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.38 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.78 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.52 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.57 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.77 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.30 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.61 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.09 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.63 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.47 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.72 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.74 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.65 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.52 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.22 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.68 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.95 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.61 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.84 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.55 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.41 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.87 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.39 | MC |