| SRR4457250 | 2nd_leaf | DAH4 | 2.08 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.97 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.36 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.74 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.71 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.85 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.97 | MC |
| SRR3745125 | anther | wt | 1.04 | MC |
| SRR3745126 | anther | wt | 1.28 | MC |
| SRR3745127 | anther | wt | 1.39 | MC |
| SRR358795 | callus | wt | 8.91 | MC |
| SRR358796 | callus | wt | 8.53 | MC |
| SRR358797 | callus | wt | 6.54 | MC |
| SRR5560728 | caryopsis | wild_type | 1.17 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.16 | MC |
| SRR4947495 | root | control | 1.13 | MC |
| SRR7265400 | coleoptile | 2dA | 2.54 | MC |
| SRR7265401 | coleoptile | 2dA | 0.38 | MC |
| SRR7265403 | coleoptile | 2dN | 2.66 | MC |
| SRR7265404 | coleoptile | 2dN | 2.52 | MC |
| SRR7265405 | coleoptile | 2dN | 1.17 | MC |
| SRR7265406 | coleoptile | 3dA | 3.25 | MC |
| SRR7265407 | coleoptile | 3dA | 1.18 | MC |
| SRR7265408 | coleoptile | 3dA | 2.38 | MC |
| SRR7265409 | coleoptile | 3dN | 3.49 | MC |
| SRR7265410 | coleoptile | 3dN | 3.60 | MC |
| SRR7265411 | coleoptile | 3dN | 1.29 | MC |
| SRR7265412 | coleoptile | 4dA | 3.08 | MC |
| SRR7265414 | coleoptile | 4dA | 1.06 | MC |
| SRR7265415 | coleoptile | 4dN | 4.07 | MC |
| SRR7265416 | coleoptile | 4dN | 3.45 | MC |
| SRR7265417 | coleoptile | 4dN | 1.15 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.90 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.63 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.07 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.42 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.58 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.62 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.90 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.97 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.79 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.64 | MC |
| SRR7265376 | embryo | 1hA | 0.59 | MC |
| SRR7265379 | embryo | 1hN | 1.30 | MC |
| SRR7265382 | embryo | 3hA | 1.80 | MC |
| SRR7265384 | embryo | 3hA | 1.82 | MC |
| SRR7265387 | embryo | 3hN | 0.88 | MC |
| SRR7265388 | embryo | 12hA | 1.98 | MC |
| SRR7265389 | embryo | 12hA | 4.89 | MC |
| SRR7265390 | embryo | 12hA | 1.39 | MC |
| SRR7265391 | embryo | 12hN | 2.90 | MC |
| SRR7265392 | embryo | 12hN | 3.37 | MC |
| SRR7265393 | embryo | 12hN | 3.18 | MC |
| SRR7265394 | embryo | 24hA | 1.13 | MC |
| SRR7265395 | embryo | 24hA | 2.21 | MC |
| SRR7265396 | embryo | 24hA | 1.53 | MC |
| SRR7265397 | embryo | 24hN | 3.38 | MC |
| SRR7265398 | embryo | 24hN | 2.52 | MC |
| SRR7265399 | embryo | 24hN | 2.37 | MC |
| SRR2338866 | endosprem | control | 1.43 | MC |
| SRR2338867 | endosprem | control | 1.53 | MC |
| SRR2338868 | endosprem | high_temperature | 1.95 | MC |
| SRR2338869 | endosprem | high_temperature | 1.78 | MC |
| SRR976168 | flag_leaf | wild_type | 1.85 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.56 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.03 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.10 | MC |
| SRR8060835 | leaf | wild_type | 0.69 | MC |
| SRR8240824 | leaf | wild_type | 2.73 | MC |
| SRR8240825 | leaf | wild_type | 2.11 | MC |
| SRR8240826 | leaf | wild_type | 1.34 | MC |
| SRR8240818 | leaf | wild_type | 1.36 | MC |
| SRR8240819 | leaf | wild_type | 1.22 | MC |
| SRR8240820 | leaf | wild_type | 1.84 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.42 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.80 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.36 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.79 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.17 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.84 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.61 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.22 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.50 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 5.91 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.56 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 5.91 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.56 | MC |
| SRR1761530 | leaf | control | 5.91 | MC |
| SRR1761531 | leaf | control | 5.56 | MC |
| SRR504365 | leaf | wt | 0.39 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.94 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.42 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.67 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.61 | MC |
| SRR5856927 | leaf | control | 0.73 | MC |
| SRR5856928 | leaf | control | 0.58 | MC |
| SRR5856929 | leaf | control | 0.42 | MC |
| SRR5856931 | leaf | salt | 0.24 | MC |
| SRR5856932 | leaf | salt | 0.89 | MC |
| SRR5856934 | leaf | control | 0.35 | MC |
| SRR5856935 | leaf | control | 0.48 | MC |
| SRR5856936 | leaf | salt | 1.14 | MC |
| SRR5856938 | leaf | salt | 1.11 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.78 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 3.97 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 4.09 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 5.13 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.59 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.97 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.34 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.13 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 3.96 | MC |
| SRR6168973 | leaf | none (control) | 1.69 | MC |
| SRR6168974 | leaf | none (control) | 0.78 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.87 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.66 | MC |
| SRR8582890 | panicle | AM | 0.78 | MC |
| SRR5110429 | panicle | Dawn | 4.11 | MC |
| SRR5110430 | panicle | Dawn | 0.67 | MC |
| SRR5110432 | panicle | Dawn | 2.57 | MC |
| SRR4947496 | root | control | 4.50 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 4.75 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.12 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.68 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.42 | MC |
| SRR5110448 | panicle | Dusk | 1.12 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.13 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.65 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.74 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.11 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.66 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.19 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.86 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.56 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.63 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.27 | MC |
| SRR5126157 | root | "mock,7_days" | 0.57 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.83 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.43 | MC |
| SRR5126165 | root | "mock,14_days" | 0.66 | MC |
| SRR5126167 | root | "mock,14_days" | 1.34 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.04 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.50 | MC |
| SRR1213694 | root | wt | 0.58 | MC |
| SRR4947483 | root | Al | 2.78 | MC |
| SRR4947485 | root | Al | 0.91 | MC |
| SRR4947488 | root | control | 2.37 | MC |
| SRR4947489 | root | control | 0.83 | MC |
| SRR4947492 | root | Al | 4.81 | MC |
| SRR4947493 | root | Al | 3.43 | MC |
| SRR4947500 | root | Al | 0.89 | MC |
| SRR4947501 | root | Al | 6.08 | MC |
| SRR4947504 | root | control | 4.66 | MC |
| SRR4947506 | root | Al | 1.09 | MC |
| SRR4947507 | root | Al | 1.37 | MC |
| SRR4947508 | root | Al | 3.29 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.94 | MC |
| SRR6441554 | seedling | wild_type | 1.02 | MC |
| SRR2154084 | seedling | wt | 1.63 | MC |
| SRR2154087 | seedling | wt | 0.34 | MC |
| SRR3098741 | seedling | wt | 0.66 | MC |
| SRR358793 | seedling | wt | 3.10 | MC |
| SRR358794 | seedling | wt | 3.62 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.84 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.25 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.13 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.78 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.87 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.85 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.94 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.79 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.01 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.40 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.54 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.97 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.04 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.51 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.58 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.84 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 5.17 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 7.42 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 7.63 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 7.28 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.58 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.88 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 6.09 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.71 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 6.97 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.84 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 7.36 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.86 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.13 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 8.12 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 5.01 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 8.04 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 6.26 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 4.80 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 6.28 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.66 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.03 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.09 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.55 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.93 | MC |