| SRR4457260 | 2nd_leaf | DAH28 | 0.29 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.93 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.01 | MC |
| SRR6320498 | carpel | wt | 1.25 | MC |
| SRR5560727 | caryopsis | wild_type | 1.18 | MC |
| SRR5560728 | caryopsis | wild_type | 0.73 | MC |
| SRR5560729 | caryopsis | wild_type | 0.38 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.49 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.76 | MC |
| SRR7265400 | coleoptile | 2dA | 0.35 | MC |
| SRR7265401 | coleoptile | 2dA | 0.92 | MC |
| SRR7265402 | coleoptile | 2dA | 1.69 | MC |
| SRR7265404 | coleoptile | 2dN | 1.09 | MC |
| SRR7265405 | coleoptile | 2dN | 0.43 | MC |
| SRR7265406 | coleoptile | 3dA | 1.99 | MC |
| SRR7265407 | coleoptile | 3dA | 0.45 | MC |
| SRR7265409 | coleoptile | 3dN | 0.45 | MC |
| SRR7265410 | coleoptile | 3dN | 0.93 | MC |
| SRR7265412 | coleoptile | 4dA | 1.42 | MC |
| SRR7265413 | coleoptile | 4dA | 2.76 | MC |
| SRR7265414 | coleoptile | 4dA | 3.32 | MC |
| SRR7265416 | coleoptile | 4dN | 1.17 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.15 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.97 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.05 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.35 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.67 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.64 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.63 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.42 | MC |
| SRR7265376 | embryo | 1hA | 0.71 | MC |
| SRR7265377 | embryo | 1hA | 0.78 | MC |
| SRR7265378 | embryo | 1hA | 1.31 | MC |
| SRR7265379 | embryo | 1hN | 1.26 | MC |
| SRR7265381 | embryo | 1hN | 0.62 | MC |
| SRR7265383 | embryo | 3hA | 4.22 | MC |
| SRR7265384 | embryo | 3hA | 0.68 | MC |
| SRR7265386 | embryo | 3hN | 1.12 | MC |
| SRR7265387 | embryo | 3hN | 0.81 | MC |
| SRR7265391 | embryo | 12hN | 0.55 | MC |
| SRR7265392 | embryo | 12hN | 0.68 | MC |
| SRR7265393 | embryo | 12hN | 0.82 | MC |
| SRR7265396 | embryo | 24hA | 0.57 | MC |
| SRR7265397 | embryo | 24hN | 1.10 | MC |
| SRR7265398 | embryo | 24hN | 0.45 | MC |
| SRR976168 | flag_leaf | wild_type | 3.06 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.45 | MC |
| SRR1213691 | flower | wt | 1.66 | MC |
| SRR8240824 | leaf | wild_type | 2.08 | MC |
| SRR8240825 | leaf | wild_type | 0.81 | MC |
| SRR8240826 | leaf | wild_type | 0.54 | MC |
| SRR8240818 | leaf | wild_type | 1.62 | MC |
| SRR8240819 | leaf | wild_type | 1.82 | MC |
| SRR8240820 | leaf | wild_type | 1.25 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.58 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.57 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.61 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.34 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.22 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.28 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.26 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.45 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.39 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.04 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.47 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.65 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.04 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.47 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.65 | MC |
| SRR1761528 | leaf | drought | 1.04 | MC |
| SRR1761530 | leaf | control | 0.47 | MC |
| SRR1761531 | leaf | control | 0.65 | MC |
| SRR504365 | leaf | wt | 0.31 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.55 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.88 | MC |
| SRR6417969 | leaf | H2O_control | 1.24 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.45 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.34 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.39 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.53 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.80 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.22 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.90 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.27 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.29 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.28 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.27 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.37 | MC |
| SRR1213693 | leaf | wt | 0.37 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.39 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.43 | MC |
| SRR6502100 | leaf | control | 0.68 | MC |
| SRR5856927 | leaf | control | 0.19 | MC |
| SRR5856928 | leaf | control | 0.45 | MC |
| SRR5856929 | leaf | control | 0.47 | MC |
| SRR5856930 | leaf | salt | 0.27 | MC |
| SRR5856933 | leaf | control | 0.27 | MC |
| SRR5856934 | leaf | control | 0.36 | MC |
| SRR5856936 | leaf | salt | 0.17 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.44 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.27 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.69 | MC |
| SRR6168973 | leaf | none (control) | 0.48 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.20 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.50 | MC |
| SRR6168979 | leaf | none (control) | 0.27 | MC |
| SRR8582888 | panicle | AM | 0.64 | MC |
| SRR5110429 | panicle | Dawn | 3.77 | MC |
| SRR4947496 | root | control | 0.70 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.54 | MC |
| SRR5110440 | panicle | Dawn + 7h | 5.28 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.47 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.96 | MC |
| SRR5110446 | panicle | Dusk | 1.00 | MC |
| SRR5110448 | panicle | Dusk | 1.27 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.62 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.88 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.36 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.28 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.90 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.20 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.63 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.96 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.77 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.10 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.88 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.55 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.77 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.82 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.07 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.33 | MC |
| SRR5126148 | root | "mock,1_day" | 0.31 | MC |
| SRR5126153 | root | "mock,7_days" | 0.47 | MC |
| SRR5126155 | root | "mock,7_days" | 0.58 | MC |
| SRR5126157 | root | "mock,7_days" | 0.82 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.94 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.43 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.90 | MC |
| SRR5126165 | root | "mock,14_days" | 0.90 | MC |
| SRR5126167 | root | "mock,14_days" | 0.95 | MC |
| SRR5126169 | root | "mock,14_days" | 1.13 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.73 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.10 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.66 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.20 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.84 | MC |
| SRR1213694 | root | wt | 0.53 | MC |
| SRR1213695 | root | wt | 0.24 | MC |
| SRR4947480 | root | control | 0.76 | MC |
| SRR4947481 | root | control | 1.24 | MC |
| SRR4947484 | root | Al | 0.60 | MC |
| SRR4947485 | root | Al | 0.99 | MC |
| SRR4947488 | root | control | 0.45 | MC |
| SRR4947492 | root | Al | 1.27 | MC |
| SRR4947493 | root | Al | 0.82 | MC |
| SRR4947494 | root | control | 0.83 | MC |
| SRR4947501 | root | Al | 0.50 | MC |
| SRR4947502 | root | control | 1.32 | MC |
| SRR4947503 | root | control | 0.56 | MC |
| SRR4947509 | root | Al | 1.07 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.66 | MC |
| SRR6502094 | root | control | 1.26 | MC |
| SRR6502096 | root | control | 0.91 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.11 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.65 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.21 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.64 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.38 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.20 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.82 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.97 | MC |
| SRR6441554 | seedling | wild_type | 0.74 | MC |
| SRR6441555 | seedling | wild_type | 0.33 | MC |
| SRR2154086 | seedling | wt | 0.92 | MC |
| SRR2154082 | seedling | wt | 0.40 | MC |
| SRR2154087 | seedling | wt | 0.93 | MC |
| SRR3098741 | seedling | wt | 0.20 | MC |
| SRR3098742 | seedling | wt | 0.18 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.45 | MC |
| SRR1944583 | seedling | no_treatment | 0.51 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.93 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.93 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.64 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.97 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.95 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.52 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.80 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.03 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.75 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.59 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.67 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.41 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.55 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.44 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.56 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.54 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.76 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.07 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.40 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.36 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.35 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.07 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.33 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.95 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 5.63 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.03 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.70 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.69 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.38 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.76 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 5.38 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 6.78 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.75 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.94 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.62 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.69 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.45 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 4.27 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.60 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.55 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 4.63 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 4.00 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.31 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.53 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 6.90 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.27 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.41 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.53 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.69 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.26 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.41 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.13 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.74 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.23 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.70 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.40 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.80 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.25 | MC |