| SRR4457250 | 2nd_leaf | DAH4 | 0.70 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.90 | MC |
| SRR7265401 | coleoptile | 2dA | 0.29 | MC |
| SRR7265406 | coleoptile | 3dA | 0.52 | MC |
| SRR7265407 | coleoptile | 3dA | 0.38 | MC |
| SRR7265413 | coleoptile | 4dA | 4.04 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.57 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.78 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.94 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.88 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.84 | MC |
| SRR7265394 | embryo | 24hA | 0.73 | MC |
| SRR7265396 | embryo | 24hA | 0.51 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.21 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.25 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.29 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.28 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.58 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.59 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.84 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.59 | MC |
| SRR1213691 | flower | wt | 0.30 | MC |
| SRR8060835 | leaf | wild_type | 0.52 | MC |
| SRR8060836 | leaf | wild_type | 0.97 | MC |
| SRR8060837 | leaf | wild_type | 0.38 | MC |
| SRR8240825 | leaf | wild_type | 0.70 | MC |
| SRR8240826 | leaf | wild_type | 0.71 | MC |
| SRR8240818 | leaf | wild_type | 0.68 | MC |
| SRR8240819 | leaf | wild_type | 0.72 | MC |
| SRR8240820 | leaf | wild_type | 2.13 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.92 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.40 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.95 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.60 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.83 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.58 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.11 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.53 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.65 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.38 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.64 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.89 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.62 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.53 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.53 | MC |
| SRR1761529 | leaf | drought | 0.53 | MC |
| SRR504365 | leaf | wt | 0.34 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.47 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.63 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.42 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.83 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.50 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.56 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.94 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.64 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.18 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.32 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.46 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.33 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.66 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.21 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.39 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.19 | MC |
| SRR1213692 | leaf | wt | 1.52 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.48 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.54 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.17 | MC |
| SRR6502088 | leaf | control | 1.87 | MC |
| SRR6502089 | leaf | control | 0.91 | MC |
| SRR6502090 | leaf | control | 1.02 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.08 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.38 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.39 | MC |
| SRR6502100 | leaf | control | 2.25 | MC |
| SRR6502101 | leaf | control | 1.80 | MC |
| SRR6502102 | leaf | control | 1.41 | MC |
| SRR5856927 | leaf | control | 0.80 | MC |
| SRR5856928 | leaf | control | 0.40 | MC |
| SRR5856929 | leaf | control | 0.20 | MC |
| SRR5856931 | leaf | salt | 0.18 | MC |
| SRR5856932 | leaf | salt | 0.37 | MC |
| SRR5856933 | leaf | control | 0.33 | MC |
| SRR5856934 | leaf | control | 0.28 | MC |
| SRR5856935 | leaf | control | 0.24 | MC |
| SRR5856937 | leaf | salt | 0.14 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 4.14 | MC |
| SRR6168979 | leaf | none (control) | 0.26 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.64 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.97 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.66 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.38 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.65 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.07 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.74 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.80 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.51 | MC |
| SRR5126148 | root | "mock,1_day" | 0.29 | MC |
| SRR5126149 | root | "mock,1_day" | 0.62 | MC |
| SRR5126155 | root | "mock,7_days" | 0.36 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.89 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.47 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.88 | MC |
| SRR5126165 | root | "mock,14_days" | 1.10 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.87 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.77 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.67 | MC |
| SRR4947478 | root | control | 0.96 | MC |
| SRR4947498 | root | Al | 0.58 | MC |
| SRR4947504 | root | control | 0.47 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.49 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.75 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.88 | MC |
| SRR6441555 | seedling | wild_type | 0.34 | MC |
| SRR2154086 | seedling | wt | 1.16 | MC |
| SRR2154082 | seedling | wt | 1.37 | MC |
| SRR2154083 | seedling | wt | 2.67 | MC |
| SRR2154084 | seedling | wt | 0.76 | MC |
| SRR2154085 | seedling | wt | 2.08 | MC |
| SRR3098741 | seedling | wt | 0.47 | MC |
| SRR3098742 | seedling | wt | 0.46 | MC |
| SRR3098743 | seedling | wt | 0.24 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.38 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.52 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.71 | MC |
| SRR358792 | seedling | wt | 1.03 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.27 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.21 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.73 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.18 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.55 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.18 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.61 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.36 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.30 | MC |