| SRR4457249 | 2nd_leaf | DAH4 | 1.13 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.73 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.41 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.16 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.87 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.69 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.65 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.55 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.56 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.34 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.15 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.69 | MC |
| SRR5560727 | caryopsis | wild_type | 0.30 | MC |
| SRR5560728 | caryopsis | wild_type | 0.50 | MC |
| SRR5560729 | caryopsis | wild_type | 0.68 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.42 | MC |
| SRR7265401 | coleoptile | 2dA | 0.35 | MC |
| SRR7265404 | coleoptile | 2dN | 0.45 | MC |
| SRR7265405 | coleoptile | 2dN | 0.39 | MC |
| SRR7265413 | coleoptile | 4dA | 0.50 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.72 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.68 | MC |
| SRR7265390 | embryo | 12hA | 0.61 | MC |
| SRR7265393 | embryo | 12hN | 0.44 | MC |
| SRR7265398 | embryo | 24hN | 0.91 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.43 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.26 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.06 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.60 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.99 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.44 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.30 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.62 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.81 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.36 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.50 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.34 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.78 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.86 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.45 | MC |
| SRR1213691 | flower | wt | 0.39 | MC |
| SRR8240824 | leaf | wild_type | 1.36 | MC |
| SRR8240825 | leaf | wild_type | 0.48 | MC |
| SRR8240818 | leaf | wild_type | 0.52 | MC |
| SRR8240819 | leaf | wild_type | 0.29 | MC |
| SRR8240820 | leaf | wild_type | 0.48 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.33 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.32 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.52 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.54 | MC |
| SRR1761529 | leaf | drought | 0.51 | MC |
| SRR504365 | leaf | wt | 0.40 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.23 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.28 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.33 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.33 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.38 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.20 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.26 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.32 | MC |
| SRR1213693 | leaf | wt | 0.42 | MC |
| SRR6168975 | leaf | none (control) | 0.39 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.29 | MC |
| SRR6168979 | leaf | none (control) | 1.51 | MC |
| SRR6168980 | leaf | none (control) | 0.75 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.42 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.41 | MC |
| SRR8582893 | panicle | PM | 0.25 | MC |
| SRR1633182 | panicle | WT | 2.56 | MC |
| SRR1633185 | panicle | WT | 3.30 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.31 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.30 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.09 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.82 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.79 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.70 | MC |
| SRR5126147 | root | "mock,1_day" | 0.78 | MC |
| SRR5126148 | root | "mock,1_day" | 0.29 | MC |
| SRR5126149 | root | "mock,1_day" | 0.69 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.71 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.56 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.41 | MC |
| SRR5126153 | root | "mock,7_days" | 0.38 | MC |
| SRR5126155 | root | "mock,7_days" | 1.01 | MC |
| SRR5126157 | root | "mock,7_days" | 1.69 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.41 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.15 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.16 | MC |
| SRR5126165 | root | "mock,14_days" | 0.97 | MC |
| SRR5126167 | root | "mock,14_days" | 0.65 | MC |
| SRR5126169 | root | "mock,14_days" | 1.44 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.82 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.34 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.75 | MC |
| SRR1213694 | root | wt | 0.42 | MC |
| SRR1213695 | root | wt | 0.43 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.53 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.67 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.07 | MC |
| SRR6502095 | root | control | 0.49 | MC |
| SRR6502096 | root | control | 0.38 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.75 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.71 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.62 | MC |
| SRR6502106 | root | control | 0.56 | MC |
| SRR6502108 | root | control | 0.51 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.28 | MC |
| SRR6441554 | seedling | wild_type | 0.28 | MC |
| SRR6441555 | seedling | wild_type | 0.38 | MC |
| SRR2154086 | seedling | wt | 0.40 | MC |
| SRR3098741 | seedling | wt | 1.26 | MC |
| SRR3098742 | seedling | wt | 0.73 | MC |
| SRR3098743 | seedling | wt | 0.82 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.42 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.28 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.67 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.82 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.49 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.42 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.70 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.35 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.56 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.59 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 0.97 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.78 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.65 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.70 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.62 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.75 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.05 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.79 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.80 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.11 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.15 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.95 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.17 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.39 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.83 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.77 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.99 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.90 | MC |