| SRR4457249 | 2nd_leaf | DAH4 | 1.37 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.38 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.52 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.49 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.10 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.39 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.02 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 4.19 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.81 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.81 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.39 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 5.37 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.57 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.38 | MC |
| SRR3745125 | anther | wt | 5.66 | MC |
| SRR3745126 | anther | wt | 2.45 | MC |
| SRR3745127 | anther | wt | 3.66 | MC |
| SRR358795 | callus | wt | 2.90 | MC |
| SRR358796 | callus | wt | 1.26 | MC |
| SRR358797 | callus | wt | 1.82 | MC |
| SRR358798 | callus | wt | 1.75 | MC |
| SRR6320473 | carpel | wt | 1.85 | MC |
| SRR6320498 | carpel | wt | 1.21 | MC |
| SRR5560727 | caryopsis | wild_type | 1.08 | MC |
| SRR5560728 | caryopsis | wild_type | 0.88 | MC |
| SRR5560729 | caryopsis | wild_type | 0.64 | MC |
| SRR4947495 | root | control | 4.74 | MC |
| SRR7265403 | coleoptile | 2dN | 0.69 | MC |
| SRR7265404 | coleoptile | 2dN | 1.71 | MC |
| SRR7265405 | coleoptile | 2dN | 1.14 | MC |
| SRR7265409 | coleoptile | 3dN | 0.43 | MC |
| SRR7265411 | coleoptile | 3dN | 0.32 | MC |
| SRR7265415 | coleoptile | 4dN | 0.62 | MC |
| SRR7265416 | coleoptile | 4dN | 0.78 | MC |
| SRR7265417 | coleoptile | 4dN | 0.67 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.52 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.06 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.36 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.37 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.33 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.70 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.64 | MC |
| SRR7265388 | embryo | 12hA | 2.75 | MC |
| SRR7265390 | embryo | 12hA | 2.03 | MC |
| SRR7265391 | embryo | 12hN | 1.79 | MC |
| SRR7265392 | embryo | 12hN | 1.55 | MC |
| SRR7265393 | embryo | 12hN | 1.35 | MC |
| SRR7265394 | embryo | 24hA | 2.17 | MC |
| SRR7265395 | embryo | 24hA | 4.75 | MC |
| SRR7265396 | embryo | 24hA | 3.35 | MC |
| SRR7265397 | embryo | 24hN | 1.55 | MC |
| SRR7265398 | embryo | 24hN | 0.64 | MC |
| SRR7265399 | embryo | 24hN | 1.62 | MC |
| SRR976168 | flag_leaf | wild_type | 0.58 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.08 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.94 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.80 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.50 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.42 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.90 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.31 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.18 | MC |
| SRR4457248 | flag_leaf | DAH44 | 5.10 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.72 | MC |
| SRR1213691 | flower | wt | 1.77 | MC |
| SRR8060835 | leaf | wild_type | 2.70 | MC |
| SRR8240824 | leaf | wild_type | 2.53 | MC |
| SRR8240818 | leaf | wild_type | 0.32 | MC |
| SRR8240819 | leaf | wild_type | 0.40 | MC |
| SRR8240820 | leaf | wild_type | 0.39 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.78 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.86 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.87 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.13 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.84 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.39 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.87 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.66 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.00 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.06 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.68 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.19 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.35 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.53 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.21 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.57 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.47 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.87 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.20 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.74 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.57 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.26 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.27 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.60 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.62 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.15 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.53 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.75 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.60 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.88 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.80 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.77 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.71 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.03 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.69 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.70 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.95 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.70 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.95 | MC |
| SRR1761530 | leaf | control | 2.70 | MC |
| SRR1761531 | leaf | control | 1.95 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.87 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.09 | MC |
| SRR6417967 | leaf | H2O_control | 1.27 | MC |
| SRR6417968 | leaf | H2O_control | 0.53 | MC |
| SRR6417969 | leaf | H2O_control | 1.92 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.04 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.72 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.42 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.08 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.21 | MC |
| SRR1213692 | leaf | wt | 2.35 | MC |
| SRR1213693 | leaf | wt | 1.00 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.26 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.61 | MC |
| SRR6502089 | leaf | control | 1.77 | MC |
| SRR6502090 | leaf | control | 2.07 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.42 | MC |
| SRR6502101 | leaf | control | 3.75 | MC |
| SRR5856930 | leaf | salt | 1.52 | MC |
| SRR5856932 | leaf | salt | 1.62 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 6.13 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 3.78 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.47 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 4.63 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 4.55 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.02 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 7.06 | MC |
| SRR6168974 | leaf | none (control) | 4.26 | MC |
| SRR6168975 | leaf | none (control) | 3.36 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.70 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.48 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.27 | MC |
| SRR6168979 | leaf | none (control) | 0.38 | MC |
| SRR6168981 | leaf | none (control) | 1.14 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.71 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.75 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.02 | MC |
| SRR8582888 | panicle | AM | 1.10 | MC |
| SRR8582889 | panicle | AM | 0.57 | MC |
| SRR8582890 | panicle | AM | 1.72 | MC |
| SRR8582891 | panicle | PM | 1.52 | MC |
| SRR8582892 | panicle | PM | 2.05 | MC |
| SRR8582893 | panicle | PM | 0.94 | MC |
| SRR5110429 | panicle | Dawn | 1.83 | MC |
| SRR5110430 | panicle | Dawn | 1.84 | MC |
| SRR5110431 | panicle | Dawn | 2.25 | MC |
| SRR5110432 | panicle | Dawn | 0.92 | MC |
| SRR4947496 | root | control | 2.41 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.08 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.85 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.27 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.95 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.35 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.41 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.40 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.06 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.53 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.52 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.49 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.31 | MC |
| SRR5110445 | panicle | Dusk | 2.59 | MC |
| SRR5110446 | panicle | Dusk | 0.46 | MC |
| SRR5110447 | panicle | Dusk | 0.83 | MC |
| SRR5110448 | panicle | Dusk | 1.49 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.00 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.16 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.12 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.64 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.65 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.97 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.93 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.05 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.79 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.58 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.21 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.89 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.89 | MC |
| SRR5126149 | root | "mock,1_day" | 4.47 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.50 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.04 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.43 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.94 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.58 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.89 | MC |
| SRR1213695 | root | wt | 2.49 | MC |
| SRR4947478 | root | control | 0.81 | MC |
| SRR4947479 | root | control | 2.72 | MC |
| SRR4947480 | root | control | 1.25 | MC |
| SRR4947481 | root | control | 3.08 | MC |
| SRR4947483 | root | Al | 2.84 | MC |
| SRR4947484 | root | Al | 4.13 | MC |
| SRR4947485 | root | Al | 2.34 | MC |
| SRR4947487 | root | control | 1.66 | MC |
| SRR4947488 | root | control | 1.57 | MC |
| SRR4947489 | root | control | 2.23 | MC |
| SRR4947490 | root | Al | 3.38 | MC |
| SRR4947492 | root | Al | 2.19 | MC |
| SRR4947493 | root | Al | 3.10 | MC |
| SRR4947494 | root | control | 1.55 | MC |
| SRR4947497 | root | control | 1.89 | MC |
| SRR4947499 | root | Al | 3.99 | MC |
| SRR4947500 | root | Al | 3.64 | MC |
| SRR4947501 | root | Al | 4.09 | MC |
| SRR4947502 | root | control | 4.38 | MC |
| SRR4947503 | root | control | 3.48 | MC |
| SRR4947504 | root | control | 4.40 | MC |
| SRR4947505 | root | control | 1.55 | MC |
| SRR4947506 | root | Al | 3.59 | MC |
| SRR4947508 | root | Al | 4.56 | MC |
| SRR4947509 | root | Al | 3.21 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.24 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.74 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.69 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.74 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.89 | MC |
| SRR358793 | seedling | wt | 1.21 | MC |
| SRR358794 | seedling | wt | 0.98 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.73 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.31 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 5.78 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.11 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.11 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.95 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.77 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.60 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.87 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.38 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.00 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.48 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.70 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.14 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.92 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.41 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 6.13 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 8.07 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.60 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.54 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 6.24 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.41 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.83 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.83 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.92 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.75 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.88 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.73 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.63 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.77 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.62 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.71 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.83 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.64 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.93 | MC |