| SRR5560727 | caryopsis | wild_type | 0.63 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.56 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.08 | MC |
| SRR7265400 | coleoptile | 2dA | 1.88 | MC |
| SRR7265401 | coleoptile | 2dA | 2.05 | MC |
| SRR7265402 | coleoptile | 2dA | 0.78 | MC |
| SRR7265404 | coleoptile | 2dN | 1.39 | MC |
| SRR7265406 | coleoptile | 3dA | 1.68 | MC |
| SRR7265407 | coleoptile | 3dA | 1.35 | MC |
| SRR7265408 | coleoptile | 3dA | 0.43 | MC |
| SRR7265410 | coleoptile | 3dN | 0.36 | MC |
| SRR7265411 | coleoptile | 3dN | 0.31 | MC |
| SRR7265413 | coleoptile | 4dA | 0.98 | MC |
| SRR7265414 | coleoptile | 4dA | 0.71 | MC |
| SRR7265416 | coleoptile | 4dN | 1.14 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.81 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.04 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.44 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.28 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.07 | MC |
| SRR7265377 | embryo | 1hA | 0.62 | MC |
| SRR7265378 | embryo | 1hA | 1.04 | MC |
| SRR7265379 | embryo | 1hN | 2.08 | MC |
| SRR7265380 | embryo | 1hN | 0.36 | MC |
| SRR7265381 | embryo | 1hN | 2.60 | MC |
| SRR7265383 | embryo | 3hA | 2.84 | MC |
| SRR7265384 | embryo | 3hA | 1.51 | MC |
| SRR7265385 | embryo | 3hN | 0.55 | MC |
| SRR7265386 | embryo | 3hN | 0.38 | MC |
| SRR7265387 | embryo | 3hN | 1.39 | MC |
| SRR7265390 | embryo | 12hA | 2.20 | MC |
| SRR7265392 | embryo | 12hN | 3.47 | MC |
| SRR7265396 | embryo | 24hA | 0.83 | MC |
| SRR7265399 | embryo | 24hN | 2.32 | MC |
| SRR2338868 | endosprem | high_temperature | 0.81 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.47 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.36 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.85 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.45 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.52 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.58 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.42 | MC |
| SRR4457248 | flag_leaf | DAH44 | 3.70 | MC |
| SRR8240825 | leaf | wild_type | 0.55 | MC |
| SRR8240826 | leaf | wild_type | 0.43 | MC |
| SRR8240820 | leaf | wild_type | 0.49 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.05 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.21 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.05 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.60 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.18 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.84 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.76 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.58 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.79 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.24 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.23 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.19 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.25 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.51 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.87 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 5.33 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 3.41 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 5.33 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 3.41 | MC |
| SRR1761530 | leaf | control | 5.33 | MC |
| SRR1761531 | leaf | control | 3.41 | MC |
| SRR504365 | leaf | wt | 0.64 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.68 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.10 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.40 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.21 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.97 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.43 | MC |
| SRR1213692 | leaf | wt | 0.28 | MC |
| SRR1213693 | leaf | wt | 2.90 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.27 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.57 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.41 | MC |
| SRR6502102 | leaf | control | 1.84 | MC |
| SRR5856927 | leaf | control | 0.29 | MC |
| SRR5856929 | leaf | control | 0.43 | MC |
| SRR5856930 | leaf | salt | 0.29 | MC |
| SRR5856931 | leaf | salt | 0.38 | MC |
| SRR5856934 | leaf | control | 1.68 | MC |
| SRR5856936 | leaf | salt | 0.18 | MC |
| SRR6168974 | leaf | none (control) | 0.44 | MC |
| SRR6168980 | leaf | none (control) | 0.17 | MC |
| SRR8582888 | panicle | AM | 0.37 | MC |
| SRR8582890 | panicle | AM | 0.39 | MC |
| SRR8582893 | panicle | PM | 1.14 | MC |
| SRR5110432 | panicle | Dawn | 0.52 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.32 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.86 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.86 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.07 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 5.37 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.45 | MC |
| SRR5126147 | root | "mock,1_day" | 1.37 | MC |
| SRR5126148 | root | "mock,1_day" | 2.50 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.19 | MC |
| SRR5126153 | root | "mock,7_days" | 0.88 | MC |
| SRR5126157 | root | "mock,7_days" | 1.37 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.14 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.21 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.04 | MC |
| SRR5126167 | root | "mock,14_days" | 1.53 | MC |
| SRR5126169 | root | "mock,14_days" | 0.38 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.49 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.24 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.36 | MC |
| SRR4947487 | root | control | 0.96 | MC |
| SRR4947492 | root | Al | 0.59 | MC |
| SRR4947498 | root | Al | 3.63 | MC |
| SRR4947505 | root | control | 1.87 | MC |
| SRR6502096 | root | control | 2.63 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.28 | MC |
| SRR6502108 | root | control | 2.99 | MC |
| SRR6441554 | seedling | wild_type | 1.10 | MC |
| SRR2154086 | seedling | wt | 0.72 | MC |
| SRR3098741 | seedling | wt | 1.93 | MC |
| SRR3098742 | seedling | wt | 0.34 | MC |
| SRR3098743 | seedling | wt | 1.64 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.74 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.47 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.92 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.81 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.30 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.07 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.33 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.62 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.60 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.52 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.94 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.68 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.72 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.96 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.54 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 4.49 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 4.95 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.02 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.35 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.77 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 6.16 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.88 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.58 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.52 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.28 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.61 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.76 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.54 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.96 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.37 | MC |