| SRR4457258 | 2nd_leaf | DAH28 | 0.75 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.41 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.34 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.55 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.68 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.70 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.73 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.77 | MC |
| SRR3745126 | anther | wt | 0.46 | MC |
| SRR358798 | callus | wt | 6.99 | MC |
| SRR6320473 | carpel | wt | 1.65 | MC |
| SRR6320498 | carpel | wt | 1.46 | MC |
| SRR5560727 | caryopsis | wild_type | 0.29 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.70 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.25 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.54 | MC |
| SRR4947495 | root | control | 4.00 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.77 | MC |
| SRR7265400 | coleoptile | 2dA | 3.32 | MC |
| SRR7265401 | coleoptile | 2dA | 2.72 | MC |
| SRR7265402 | coleoptile | 2dA | 3.02 | MC |
| SRR7265403 | coleoptile | 2dN | 1.10 | MC |
| SRR7265404 | coleoptile | 2dN | 0.44 | MC |
| SRR7265406 | coleoptile | 3dA | 0.95 | MC |
| SRR7265407 | coleoptile | 3dA | 1.12 | MC |
| SRR7265413 | coleoptile | 4dA | 0.68 | MC |
| SRR7265414 | coleoptile | 4dA | 2.16 | MC |
| SRR7265415 | coleoptile | 4dN | 0.65 | MC |
| SRR7265416 | coleoptile | 4dN | 2.07 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.68 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.04 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.88 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.14 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.65 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.67 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.68 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.37 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.09 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.05 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.47 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.31 | MC |
| SRR7265378 | embryo | 1hA | 0.29 | MC |
| SRR7265381 | embryo | 1hN | 0.28 | MC |
| SRR7265388 | embryo | 12hA | 1.10 | MC |
| SRR7265389 | embryo | 12hA | 0.72 | MC |
| SRR7265390 | embryo | 12hA | 0.93 | MC |
| SRR7265394 | embryo | 24hA | 2.86 | MC |
| SRR7265395 | embryo | 24hA | 3.00 | MC |
| SRR7265396 | embryo | 24hA | 4.24 | MC |
| SRR7265397 | embryo | 24hN | 0.52 | MC |
| SRR7265399 | embryo | 24hN | 0.40 | MC |
| SRR2338866 | endosprem | control | 1.05 | MC |
| SRR2338869 | endosprem | high_temperature | 1.89 | MC |
| SRR976168 | flag_leaf | wild_type | 1.30 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.30 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.60 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.42 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.71 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.69 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.37 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.52 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.40 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.41 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.25 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.64 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.79 | MC |
| SRR1213691 | flower | wt | 0.39 | MC |
| SRR8060836 | leaf | wild_type | 0.32 | MC |
| SRR8060837 | leaf | wild_type | 0.21 | MC |
| SRR8240824 | leaf | wild_type | 0.41 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.70 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.54 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.63 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.14 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.55 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.31 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.54 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.82 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.36 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.57 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.20 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.50 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.40 | MC |
| SRR6417967 | leaf | H2O_control | 0.47 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.34 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.32 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.41 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.23 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.42 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.21 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.32 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.13 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.43 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.60 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.67 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.73 | MC |
| SRR6502088 | leaf | control | 1.90 | MC |
| SRR6502089 | leaf | control | 1.32 | MC |
| SRR6502090 | leaf | control | 1.36 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.65 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.77 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.82 | MC |
| SRR6502100 | leaf | control | 1.12 | MC |
| SRR6502101 | leaf | control | 1.13 | MC |
| SRR6502102 | leaf | control | 1.13 | MC |
| SRR5856927 | leaf | control | 0.21 | MC |
| SRR5856932 | leaf | salt | 0.17 | MC |
| SRR5856933 | leaf | control | 0.41 | MC |
| SRR5856935 | leaf | control | 0.65 | MC |
| SRR5856937 | leaf | salt | 0.18 | MC |
| SRR5856938 | leaf | salt | 0.39 | MC |
| SRR6168973 | leaf | none (control) | 0.59 | MC |
| SRR6168974 | leaf | none (control) | 0.68 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.48 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.46 | MC |
| SRR6168979 | leaf | none (control) | 0.21 | MC |
| SRR6168980 | leaf | none (control) | 0.18 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.45 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.27 | MC |
| SRR8582889 | panicle | AM | 0.16 | MC |
| SRR5110429 | panicle | Dawn | 3.20 | MC |
| SRR5110430 | panicle | Dawn | 2.74 | MC |
| SRR4947496 | root | control | 3.77 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.49 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.74 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 4.15 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.99 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.03 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.41 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.09 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.26 | MC |
| SRR5110446 | panicle | Dusk | 2.25 | MC |
| SRR5110450 | panicle | Dawn + 14h | 4.60 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.90 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.96 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.38 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.69 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.76 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.21 | MC |
| SRR1633185 | panicle | WT | 5.47 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.34 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.59 | MC |
| SRR5126147 | root | "mock,1_day" | 2.48 | MC |
| SRR5126148 | root | "mock,1_day" | 2.17 | MC |
| SRR5126149 | root | "mock,1_day" | 1.22 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.51 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.88 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.46 | MC |
| SRR5126153 | root | "mock,7_days" | 2.57 | MC |
| SRR5126157 | root | "mock,7_days" | 0.59 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.19 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.64 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.36 | MC |
| SRR5126165 | root | "mock,14_days" | 2.36 | MC |
| SRR5126167 | root | "mock,14_days" | 0.60 | MC |
| SRR5126169 | root | "mock,14_days" | 1.68 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.37 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.02 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.64 | MC |
| SRR1213694 | root | wt | 0.23 | MC |
| SRR4947478 | root | control | 2.66 | MC |
| SRR4947479 | root | control | 2.09 | MC |
| SRR4947482 | root | Al | 1.90 | MC |
| SRR4947484 | root | Al | 4.07 | MC |
| SRR4947485 | root | Al | 4.71 | MC |
| SRR4947490 | root | Al | 3.55 | MC |
| SRR4947491 | root | Al | 5.01 | MC |
| SRR4947492 | root | Al | 4.08 | MC |
| SRR4947493 | root | Al | 3.13 | MC |
| SRR4947494 | root | control | 4.29 | MC |
| SRR4947497 | root | control | 4.40 | MC |
| SRR4947498 | root | Al | 5.60 | MC |
| SRR4947500 | root | Al | 4.39 | MC |
| SRR4947501 | root | Al | 5.13 | MC |
| SRR4947502 | root | control | 3.75 | MC |
| SRR4947503 | root | control | 3.53 | MC |
| SRR4947504 | root | control | 2.92 | MC |
| SRR4947506 | root | Al | 2.74 | MC |
| SRR4947507 | root | Al | 4.51 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.91 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.41 | MC |
| SRR6502094 | root | control | 3.02 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.84 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.76 | MC |
| SRR6502106 | root | control | 2.33 | MC |
| SRR6502107 | root | control | 2.04 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.50 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.76 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.20 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.86 | MC |
| SRR6441554 | seedling | wild_type | 0.21 | MC |
| SRR6441555 | seedling | wild_type | 0.41 | MC |
| SRR2154086 | seedling | wt | 4.18 | MC |
| SRR2154082 | seedling | wt | 1.28 | MC |
| SRR2154083 | seedling | wt | 1.32 | MC |
| SRR2154084 | seedling | wt | 1.81 | MC |
| SRR2154085 | seedling | wt | 1.18 | MC |
| SRR2154087 | seedling | wt | 1.78 | MC |
| SRR3098743 | seedling | wt | 0.26 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.68 | MC |
| SRR1944583 | seedling | no_treatment | 0.38 | MC |
| SRR358792 | seedling | wt | 0.91 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.21 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.31 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.26 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.40 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.77 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.75 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.52 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.77 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.31 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.43 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.77 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.46 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.71 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.63 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.38 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 8.51 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 8.26 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.78 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.84 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.13 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.45 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.74 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.88 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.33 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.52 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.47 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.14 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.05 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.24 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.56 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.92 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.64 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.75 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.50 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.43 | MC |