| SRR4457249 | 2nd_leaf | DAH4 | 0.53 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.55 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.33 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.41 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.58 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.81 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.57 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.46 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.78 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.30 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.95 | MC |
| SRR7265406 | coleoptile | 3dA | 0.33 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.47 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.84 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.26 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.27 | MC |
| SRR7265376 | embryo | 1hA | 0.72 | MC |
| SRR7265377 | embryo | 1hA | 0.59 | MC |
| SRR7265378 | embryo | 1hA | 0.64 | MC |
| SRR7265379 | embryo | 1hN | 0.75 | MC |
| SRR7265380 | embryo | 1hN | 0.60 | MC |
| SRR7265381 | embryo | 1hN | 0.94 | MC |
| SRR7265382 | embryo | 3hA | 0.69 | MC |
| SRR7265384 | embryo | 3hA | 0.40 | MC |
| SRR7265385 | embryo | 3hN | 0.52 | MC |
| SRR7265387 | embryo | 3hN | 0.39 | MC |
| SRR7265399 | embryo | 24hN | 0.54 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.24 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.34 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.93 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.13 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.73 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.79 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.85 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.22 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.63 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.41 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.33 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.61 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.40 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.49 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.40 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.45 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.82 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.39 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.44 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.41 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.07 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.11 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.37 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.72 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.80 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.38 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.27 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.81 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.77 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.44 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.68 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.33 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.17 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.24 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.08 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.65 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.62 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.47 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.88 | MC |
| SRR1761530 | leaf | control | 1.56 | MC |
| SRR1761531 | leaf | control | 0.70 | MC |
| SRR504365 | leaf | wt | 0.52 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.45 | MC |
| SRR6417968 | leaf | H2O_control | 0.42 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.69 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.87 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.60 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.37 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.61 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.66 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.45 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.53 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.65 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.36 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.76 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.67 | MC |
| SRR1213692 | leaf | wt | 0.77 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.59 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.48 | MC |
| SRR8582888 | panicle | AM | 0.41 | MC |
| SRR8582889 | panicle | AM | 0.16 | MC |
| SRR8582890 | panicle | AM | 0.61 | MC |
| SRR8582891 | panicle | PM | 1.36 | MC |
| SRR8582892 | panicle | PM | 1.13 | MC |
| SRR8582893 | panicle | PM | 0.65 | MC |
| SRR1633185 | panicle | WT | 0.37 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.39 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.06 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.45 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.49 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.11 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.55 | MC |
| SRR5126157 | root | "mock,7_days" | 0.58 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.56 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.56 | MC |
| SRR1213695 | root | wt | 0.49 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.42 | MC |
| SRR6441555 | seedling | wild_type | 0.49 | MC |
| SRR2154085 | seedling | wt | 0.62 | MC |
| SRR3098742 | seedling | wt | 0.32 | MC |
| SRR3098743 | seedling | wt | 0.16 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.59 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.82 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.87 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.36 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.54 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.13 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.17 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.13 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.64 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.26 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.05 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.11 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.12 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.21 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.26 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.96 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.18 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.16 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.67 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.86 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.00 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.30 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.08 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.70 | MC |