| SRR4457251 | 2nd_leaf | DAH4 | 0.57 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.49 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.61 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.54 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.26 | MC |
| SRR3745125 | anther | wt | 0.95 | MC |
| SRR6320498 | carpel | wt | 0.98 | MC |
| SRR5560727 | caryopsis | wild_type | 0.77 | MC |
| SRR5560728 | caryopsis | wild_type | 0.73 | MC |
| SRR5560729 | caryopsis | wild_type | 0.72 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.20 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.28 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.66 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.40 | MC |
| SRR7265400 | coleoptile | 2dA | 0.37 | MC |
| SRR7265401 | coleoptile | 2dA | 0.35 | MC |
| SRR7265407 | coleoptile | 3dA | 0.37 | MC |
| SRR7265411 | coleoptile | 3dN | 0.52 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.43 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.90 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.12 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.58 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.35 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.78 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.07 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.57 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.70 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.62 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.47 | MC |
| SRR7265377 | embryo | 1hA | 0.36 | MC |
| SRR7265378 | embryo | 1hA | 0.24 | MC |
| SRR7265388 | embryo | 12hA | 0.59 | MC |
| SRR7265389 | embryo | 12hA | 0.61 | MC |
| SRR7265390 | embryo | 12hA | 0.40 | MC |
| SRR7265394 | embryo | 24hA | 0.75 | MC |
| SRR7265395 | embryo | 24hA | 0.80 | MC |
| SRR7265396 | embryo | 24hA | 0.52 | MC |
| SRR7265397 | embryo | 24hN | 0.69 | MC |
| SRR2338866 | endosprem | control | 1.13 | MC |
| SRR2338868 | endosprem | high_temperature | 0.74 | MC |
| SRR2338869 | endosprem | high_temperature | 1.37 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.24 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.24 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.34 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.48 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.33 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.78 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.57 | MC |
| SRR1213691 | flower | wt | 0.83 | MC |
| SRR8240824 | leaf | wild_type | 0.31 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.57 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.57 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.55 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.53 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.65 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.42 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.40 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.41 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.50 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.52 | MC |
| SRR6417968 | leaf | H2O_control | 0.75 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.35 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.45 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.28 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.58 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.34 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.59 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.71 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.86 | MC |
| SRR6502088 | leaf | control | 0.46 | MC |
| SRR6502089 | leaf | control | 0.47 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.20 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.68 | MC |
| SRR6502100 | leaf | control | 0.53 | MC |
| SRR6502101 | leaf | control | 0.58 | MC |
| SRR6502102 | leaf | control | 1.57 | MC |
| SRR8582888 | panicle | AM | 0.39 | MC |
| SRR8582889 | panicle | AM | 0.16 | MC |
| SRR8582890 | panicle | AM | 0.34 | MC |
| SRR8582891 | panicle | PM | 1.54 | MC |
| SRR8582893 | panicle | PM | 1.11 | MC |
| SRR4947496 | root | control | 0.94 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.83 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.29 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.93 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.39 | MC |
| SRR5110446 | panicle | Dusk | 0.56 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.62 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.69 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.38 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.61 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.50 | MC |
| SRR1633182 | panicle | WT | 0.69 | MC |
| SRR1633185 | panicle | WT | 0.82 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.38 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.42 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.75 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.49 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.71 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.07 | MC |
| SRR5126147 | root | "mock,1_day" | 1.81 | MC |
| SRR5126148 | root | "mock,1_day" | 0.70 | MC |
| SRR5126149 | root | "mock,1_day" | 2.42 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.74 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.72 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.19 | MC |
| SRR5126153 | root | "mock,7_days" | 1.01 | MC |
| SRR5126155 | root | "mock,7_days" | 1.49 | MC |
| SRR5126157 | root | "mock,7_days" | 4.65 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.71 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.72 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.16 | MC |
| SRR5126165 | root | "mock,14_days" | 1.94 | MC |
| SRR5126167 | root | "mock,14_days" | 1.27 | MC |
| SRR5126169 | root | "mock,14_days" | 1.93 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.02 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.49 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.45 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.28 | MC |
| SRR1213694 | root | wt | 0.22 | MC |
| SRR1213695 | root | wt | 0.14 | MC |
| SRR4947480 | root | control | 2.24 | MC |
| SRR4947481 | root | control | 1.91 | MC |
| SRR4947488 | root | control | 0.73 | MC |
| SRR4947489 | root | control | 1.87 | MC |
| SRR4947492 | root | Al | 1.01 | MC |
| SRR4947493 | root | Al | 1.39 | MC |
| SRR4947497 | root | control | 0.78 | MC |
| SRR4947500 | root | Al | 1.01 | MC |
| SRR4947501 | root | Al | 0.58 | MC |
| SRR4947503 | root | control | 0.64 | MC |
| SRR4947504 | root | control | 1.56 | MC |
| SRR4947505 | root | control | 1.31 | MC |
| SRR4947508 | root | Al | 1.62 | MC |
| SRR4947509 | root | Al | 1.04 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.86 | MC |
| SRR6502094 | root | control | 2.20 | MC |
| SRR6502095 | root | control | 3.63 | MC |
| SRR6502096 | root | control | 1.99 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.94 | MC |
| SRR6502106 | root | control | 3.02 | MC |
| SRR6502107 | root | control | 2.49 | MC |
| SRR6502108 | root | control | 2.55 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.49 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.28 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.41 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.48 | MC |
| SRR2154085 | seedling | wt | 0.58 | MC |
| SRR3098741 | seedling | wt | 0.23 | MC |
| SRR3098743 | seedling | wt | 0.36 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.05 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.82 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.34 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.69 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.91 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.92 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.45 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.31 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.35 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.57 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.60 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.69 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.36 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.44 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.69 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.65 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.43 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.75 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.90 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.61 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.71 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.18 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.67 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.81 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.65 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.35 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.71 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.97 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.40 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.63 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.30 | MC |