| SRR4457249 | 2nd_leaf | DAH4 | 0.84 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.64 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.24 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.57 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.52 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.39 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.30 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.65 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.90 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.69 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.75 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.54 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.55 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.31 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.33 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.97 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.80 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.45 | MC |
| SRR3745125 | anther | wt | 0.58 | MC |
| SRR3745126 | anther | wt | 0.53 | MC |
| SRR3745127 | anther | wt | 0.78 | MC |
| SRR5560727 | caryopsis | wild_type | 0.54 | MC |
| SRR5560728 | caryopsis | wild_type | 0.74 | MC |
| SRR5560729 | caryopsis | wild_type | 0.62 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.40 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.53 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.61 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.03 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.62 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.60 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.71 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.52 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.61 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.95 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.95 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.02 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.57 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.27 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.36 | MC |
| SRR7265376 | embryo | 1hA | 0.44 | MC |
| SRR7265378 | embryo | 1hA | 0.48 | MC |
| SRR7265379 | embryo | 1hN | 0.38 | MC |
| SRR7265380 | embryo | 1hN | 0.37 | MC |
| SRR7265381 | embryo | 1hN | 0.33 | MC |
| SRR7265382 | embryo | 3hA | 0.68 | MC |
| SRR7265383 | embryo | 3hA | 0.59 | MC |
| SRR7265384 | embryo | 3hA | 0.31 | MC |
| SRR7265385 | embryo | 3hN | 0.75 | MC |
| SRR7265386 | embryo | 3hN | 0.31 | MC |
| SRR2338867 | endosprem | control | 1.07 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.27 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.26 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.33 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.67 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.48 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.84 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.72 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.04 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.73 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.33 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.38 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.40 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.87 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.39 | MC |
| SRR1213691 | flower | wt | 0.65 | MC |
| SRR8060835 | leaf | wild_type | 0.95 | MC |
| SRR8060836 | leaf | wild_type | 0.33 | MC |
| SRR8060837 | leaf | wild_type | 0.77 | MC |
| SRR8240824 | leaf | wild_type | 1.48 | MC |
| SRR8240825 | leaf | wild_type | 0.63 | MC |
| SRR8240826 | leaf | wild_type | 0.92 | MC |
| SRR8240818 | leaf | wild_type | 0.76 | MC |
| SRR8240819 | leaf | wild_type | 0.20 | MC |
| SRR8240820 | leaf | wild_type | 0.68 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.20 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.92 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.31 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.22 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.20 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.40 | MC |
| SRR504365 | leaf | wt | 0.99 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.31 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.25 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.32 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.32 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.13 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.13 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.34 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.33 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.27 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.36 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.29 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.35 | MC |
| SRR1213692 | leaf | wt | 0.62 | MC |
| SRR1213693 | leaf | wt | 0.46 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.36 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.61 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.46 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.51 | MC |
| SRR6502100 | leaf | control | 0.40 | MC |
| SRR6502101 | leaf | control | 0.35 | MC |
| SRR5856927 | leaf | control | 1.75 | MC |
| SRR5856928 | leaf | control | 1.14 | MC |
| SRR5856929 | leaf | control | 1.26 | MC |
| SRR5856930 | leaf | salt | 0.77 | MC |
| SRR5856931 | leaf | salt | 0.51 | MC |
| SRR5856932 | leaf | salt | 0.52 | MC |
| SRR5856933 | leaf | control | 1.89 | MC |
| SRR5856934 | leaf | control | 0.83 | MC |
| SRR5856935 | leaf | control | 0.81 | MC |
| SRR5856936 | leaf | salt | 0.72 | MC |
| SRR5856937 | leaf | salt | 0.38 | MC |
| SRR5856938 | leaf | salt | 0.66 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 2.22 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.40 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 0.98 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.56 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.39 | MC |
| SRR6168973 | leaf | none (control) | 2.38 | MC |
| SRR6168974 | leaf | none (control) | 2.04 | MC |
| SRR6168975 | leaf | none (control) | 2.29 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.35 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.35 | MC |
| SRR6168980 | leaf | none (control) | 0.20 | MC |
| SRR6168981 | leaf | none (control) | 0.97 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.41 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.52 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.39 | MC |
| SRR5110429 | panicle | Dawn | 0.76 | MC |
| SRR5110431 | panicle | Dawn | 0.39 | MC |
| SRR5110432 | panicle | Dawn | 0.66 | MC |
| SRR4947496 | root | control | 0.49 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.68 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.59 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.66 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.68 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.74 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.37 | MC |
| SRR5110445 | panicle | Dusk | 0.81 | MC |
| SRR5110446 | panicle | Dusk | 0.69 | MC |
| SRR5110447 | panicle | Dusk | 0.59 | MC |
| SRR5110448 | panicle | Dusk | 0.65 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.32 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.80 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.57 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.34 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.98 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.94 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.49 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.87 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.48 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.57 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.81 | MC |
| SRR1633182 | panicle | WT | 0.85 | MC |
| SRR1633185 | panicle | WT | 0.61 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.54 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.88 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.09 | MC |
| SRR5126147 | root | "mock,1_day" | 0.37 | MC |
| SRR5126149 | root | "mock,1_day" | 0.71 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.81 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.11 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.78 | MC |
| SRR5126153 | root | "mock,7_days" | 1.26 | MC |
| SRR5126155 | root | "mock,7_days" | 1.87 | MC |
| SRR5126157 | root | "mock,7_days" | 2.17 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.60 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.28 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.87 | MC |
| SRR5126165 | root | "mock,14_days" | 1.73 | MC |
| SRR5126167 | root | "mock,14_days" | 1.50 | MC |
| SRR5126169 | root | "mock,14_days" | 2.14 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.67 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.29 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.47 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.88 | MC |
| SRR1213694 | root | wt | 0.53 | MC |
| SRR1213695 | root | wt | 0.31 | MC |
| SRR4947484 | root | Al | 0.50 | MC |
| SRR4947485 | root | Al | 0.62 | MC |
| SRR4947492 | root | Al | 0.76 | MC |
| SRR4947500 | root | Al | 0.88 | MC |
| SRR4947501 | root | Al | 0.93 | MC |
| SRR4947502 | root | control | 0.51 | MC |
| SRR4947509 | root | Al | 0.78 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.55 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.43 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.55 | MC |
| SRR6502094 | root | control | 0.62 | MC |
| SRR6502095 | root | control | 1.12 | MC |
| SRR6502096 | root | control | 0.69 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.18 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.77 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.60 | MC |
| SRR6502106 | root | control | 1.17 | MC |
| SRR6502107 | root | control | 0.61 | MC |
| SRR6502108 | root | control | 0.80 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.53 | MC |
| SRR6441554 | seedling | wild_type | 0.74 | MC |
| SRR6441555 | seedling | wild_type | 1.12 | MC |
| SRR2154086 | seedling | wt | 0.62 | MC |
| SRR2154082 | seedling | wt | 0.36 | MC |
| SRR2154083 | seedling | wt | 0.30 | MC |
| SRR2154084 | seedling | wt | 0.49 | MC |
| SRR2154085 | seedling | wt | 0.63 | MC |
| SRR2154087 | seedling | wt | 0.59 | MC |
| SRR3098741 | seedling | wt | 0.46 | MC |
| SRR3098742 | seedling | wt | 0.32 | MC |
| SRR3098743 | seedling | wt | 0.41 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.36 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.94 | MC |
| SRR1944583 | seedling | no_treatment | 0.96 | MC |
| SRR358793 | seedling | wt | 0.56 | MC |
| SRR358794 | seedling | wt | 0.90 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.14 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.15 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.72 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.11 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.28 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.69 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.40 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.28 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.19 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.29 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.38 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.33 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.60 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.21 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.98 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.63 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.40 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.51 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.05 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.02 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.34 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.38 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.54 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.31 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.63 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.71 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.35 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.70 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.88 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.65 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.68 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.16 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.32 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.56 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.65 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.75 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.99 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.78 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.66 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.93 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.35 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.78 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.94 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.53 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.33 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.72 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.64 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.94 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.73 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.75 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.00 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.35 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.11 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.38 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.26 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.16 | MC |